FFCP PHASE1:Mm9::chr3:127492105..127492120,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1278 | |MCL_coexpression_id=1278 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:127492105..127492120,+ | |||
|description=CAGE_peak_at_chr3:127492105..127492120,+ | |description=CAGE_peak_at_chr3:127492105..127492120,+ | ||
|id=chr3:127492105..127492120,+ | |id=chr3:127492105..127492120,+ | ||
|ontology_enrichment_celltype=CL:0002563!2.70e-14!9;CL:0002251!2.70e-14!9;CL:0000066!6.21e-10!25;CL:0000239!9.28e-10!6;CL:0000677!9.28e-10!6;CL:0000212!9.28e-10!6;CL:0000584!9.28e-10!6;CL:0000075!3.24e-08!7;CL:0000223!8.04e-08!20;CL:0002076!1.09e-07!15 | |ontology_enrichment_celltype=CL:0002563!2.70e-14!9;CL:0002251!2.70e-14!9;CL:0000066!6.21e-10!25;CL:0000239!9.28e-10!6;CL:0000677!9.28e-10!6;CL:0000212!9.28e-10!6;CL:0000584!9.28e-10!6;CL:0000075!3.24e-08!7;CL:0000223!8.04e-08!20;CL:0002076!1.09e-07!15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.28e-19,9;CL:0002251,3.28e-19,9;CL:0000066,9.79e-14,25;CL:0000239,1.64e-11,6;CL:0000677,1.64e-11,6;CL:0000584,1.64e-11,6;CL:0002076,5.40e-11,15;CL:0000223,7.80e-10,20;CL:0000075,8.03e-10,7;CL:0002250,1.66e-09,3;CL:0000682,5.58e-09,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.97e-28!43;UBERON:0005409!1.59e-22!59;UBERON:0000344!3.83e-22!15;UBERON:0001242!6.23e-20!13;UBERON:0000060!6.23e-20!13;UBERON:0001262!6.23e-20!13;UBERON:0004786!6.23e-20!13;UBERON:0003350!2.70e-14!9;UBERON:0004808!2.70e-14!9;UBERON:0001277!2.70e-14!9;UBERON:0004923!8.69e-14!24;UBERON:0000485!2.79e-11!11;UBERON:0001007!3.81e-09!128;UBERON:0001555!3.81e-09!128;UBERON:0007026!3.81e-09!128;UBERON:0004119!7.55e-09!130;UBERON:0000925!7.55e-09!130;UBERON:0006595!7.55e-09!130;UBERON:0004921!4.91e-08!126;UBERON:0004185!4.91e-08!126 | |ontology_enrichment_uberon=UBERON:0000160!1.97e-28!43;UBERON:0005409!1.59e-22!59;UBERON:0000344!3.83e-22!15;UBERON:0001242!6.23e-20!13;UBERON:0000060!6.23e-20!13;UBERON:0001262!6.23e-20!13;UBERON:0004786!6.23e-20!13;UBERON:0003350!2.70e-14!9;UBERON:0004808!2.70e-14!9;UBERON:0001277!2.70e-14!9;UBERON:0004923!8.69e-14!24;UBERON:0000485!2.79e-11!11;UBERON:0001007!3.81e-09!128;UBERON:0001555!3.81e-09!128;UBERON:0007026!3.81e-09!128;UBERON:0004119!7.55e-09!130;UBERON:0000925!7.55e-09!130;UBERON:0006595!7.55e-09!130;UBERON:0004921!4.91e-08!126;UBERON:0004185!4.91e-08!126 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.42e-57,31;UBERON:0005409,1.45e-38,47;UBERON:0001242,5.56e-29,13;UBERON:0001262,5.56e-29,13;UBERON:0004786,5.56e-29,13;UBERON:0000344,8.83e-25,15;UBERON:0003350,3.28e-19,9;UBERON:0004808,3.28e-19,9;UBERON:0001277,3.28e-19,9;UBERON:0000485,1.78e-15,11;UBERON:0004923,1.53e-14,24;UBERON:0004921,8.99e-14,114;UBERON:0001007,1.96e-13,116;UBERON:0001555,1.96e-13,116;UBERON:0007026,1.96e-13,116;UBERON:0004119,4.14e-13,118;UBERON:0000925,4.14e-13,118;UBERON:0006595,4.14e-13,118;UBERON:0002108,3.60e-11,4;UBERON:0000331,4.07e-09,3;UBERON:0002116,4.07e-09,3;UBERON:0001204,4.07e-09,3;UBERON:0001168,4.07e-09,3 | |||
|phase1_expression=0,8.72438519098403,9.55498402718026,3.0246421130683,2.00358291978539,2.35030980676646,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47997726838022,0.68822784320151,5.16808767703518,5.59990595006797,6.24866574789078,7.22088993934221,3.52842181663903,6.43018480900384,0,0,0,7.51014211353314,6.15068187826422,7.9626048942324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,1.03575153458869,0.148442139064825,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,3.72783522436244,0,0,7.91916871146633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,6.08236303326152,0,0,0.644337306610467,2.62188582010345,5.33707305227689,4.37518940058886,5.69434873853414,6.91735609840846,8.29406189040889,10.9426059622633,12.2827374885046,8.98819408654222,1.94524244887225,0.796565093017469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,1.68499465279331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0,0.188626341386076,0.280924522409647,0.128050304809739,0.287177344778066,0,0.115884325944855,0,1.23625770240992,0.441596760403192,0,0,0.238436189947321,0.290692833264657,0,0.423073039458382,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0,0,0.309873682371932,0,0,0,0.429742108096597,0,0,0 | |phase1_expression=0,8.72438519098403,9.55498402718026,3.0246421130683,2.00358291978539,2.35030980676646,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47997726838022,0.68822784320151,5.16808767703518,5.59990595006797,6.24866574789078,7.22088993934221,3.52842181663903,6.43018480900384,0,0,0,7.51014211353314,6.15068187826422,7.9626048942324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15945795480671,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5709193985953,1.03575153458869,0.148442139064825,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,3.72783522436244,0,0,7.91916871146633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,6.08236303326152,0,0,0.644337306610467,2.62188582010345,5.33707305227689,4.37518940058886,5.69434873853414,6.91735609840846,8.29406189040889,10.9426059622633,12.2827374885046,8.98819408654222,1.94524244887225,0.796565093017469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,1.68499465279331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0,0.188626341386076,0.280924522409647,0.128050304809739,0.287177344778066,0,0.115884325944855,0,1.23625770240992,0.441596760403192,0,0,0.238436189947321,0.290692833264657,0,0.423073039458382,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0,0,0.309873682371932,0,0,0,0.429742108096597,0,0,0 | ||
|short_description=p@chr3:127492105..127492120,+ | |short_description=p@chr3:127492105..127492120,+ | ||
}} | }} |
Latest revision as of 00:18, 6 August 2015
Short description: | p@chr3:127492105..127492120, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:127492105..127492120, + |
Coexpression cluster: | MCL_coexpression_mm9:1278 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.28e-19 | 9 |
epithelial cell of alimentary canal | 3.28e-19 | 9 |
epithelial cell | 9.79e-14 | 25 |
brush border epithelial cell | 1.64e-11 | 6 |
gut absorptive cell | 1.64e-11 | 6 |
enterocyte | 1.64e-11 | 6 |
endo-epithelial cell | 5.40e-11 | 15 |
endodermal cell | 7.80e-10 | 20 |
columnar/cuboidal epithelial cell | 8.03e-10 | 7 |
intestinal crypt stem cell | 1.66e-09 | 3 |
M cell of gut | 5.58e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.42e-57 | 31 |
gastrointestinal system | 1.45e-38 | 47 |
intestinal mucosa | 5.56e-29 | 13 |
wall of intestine | 5.56e-29 | 13 |
gastrointestinal system mucosa | 5.56e-29 | 13 |
mucosa | 8.83e-25 | 15 |
epithelium of mucosa | 3.28e-19 | 9 |
gastrointestinal system epithelium | 3.28e-19 | 9 |
intestinal epithelium | 3.28e-19 | 9 |
simple columnar epithelium | 1.78e-15 | 11 |
organ component layer | 1.53e-14 | 24 |
subdivision of digestive tract | 8.99e-14 | 114 |
digestive system | 1.96e-13 | 116 |
digestive tract | 1.96e-13 | 116 |
primitive gut | 1.96e-13 | 116 |
endoderm-derived structure | 4.14e-13 | 118 |
endoderm | 4.14e-13 | 118 |
presumptive endoderm | 4.14e-13 | 118 |
small intestine | 3.60e-11 | 4 |
ileal mucosa | 4.07e-09 | 3 |
ileum | 4.07e-09 | 3 |
mucosa of small intestine | 4.07e-09 | 3 |
wall of small intestine | 4.07e-09 | 3 |