FFCP PHASE1:Mm9::chr11:60624730..60624743,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=20425|HGNC=|MCL_coexpression_id=2694|UniProt=P50431|association_with_transcript=23bp_to_ENSMUST00000018744,NM_009171,uc007jgo.1,uc007jgp.1_5end|description=CAGE_peak_2_at_Shmt1_5end|id=chr11:60624730..60624743,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009854!5.87e-13!23;UBERON:0009856!5.87e-13!23;UBERON:0002107!1.34e-12!22;UBERON:0007499!1.34e-12!22;UBERON:0006925!1.34e-12!22;UBERON:0009497!1.34e-12!22;UBERON:0000015!1.34e-12!22;UBERON:0002423!1.34e-12!22;UBERON:0006235!1.34e-12!22;UBERON:0008835!1.34e-12!22;UBERON:0003894!1.34e-12!22;UBERON:0004161!1.34e-12!22;UBERON:0008836!1.34e-12!22;UBERON:0005172!6.48e-12!49;UBERON:0005173!6.48e-12!49;UBERON:0002417!6.48e-12!49;UBERON:0000916!6.48e-12!49;UBERON:0002365!5.94e-11!25;UBERON:0002330!5.94e-11!25;UBERON:0003929!1.07e-10!55;UBERON:0002368!5.48e-10!60;UBERON:0001007!1.05e-09!128;UBERON:0001555!1.05e-09!128;UBERON:0007026!1.05e-09!128;UBERON:0002530!1.70e-09!65;UBERON:0004119!3.48e-09!130;UBERON:0000925!3.48e-09!130;UBERON:0006595!3.48e-09!130;UBERON:0004921!3.86e-09!126;UBERON:0004185!3.86e-09!126;UBERON:0009569!4.37e-08!66;UBERON:0005911!5.10e-08!69;UBERON:0000949!1.55e-07!72;UBERON:0005057!9.93e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0009854,7.29e-18,23;UBERON:0009856,7.29e-18,23;UBERON:0002107,2.70e-17,22;UBERON:0007499,2.70e-17,22;UBERON:0006925,2.70e-17,22;UBERON:0009497,2.70e-17,22;UBERON:0000015,2.70e-17,22;UBERON:0002423,2.70e-17,22;UBERON:0006235,2.70e-17,22;UBERON:0008835,2.70e-17,22;UBERON:0003894,2.70e-17,22;UBERON:0004161,2.70e-17,22;UBERON:0008836,2.70e-17,22;UBERON:0005172,6.09e-16,49;UBERON:0005173,6.09e-16,49;UBERON:0002417,6.09e-16,49;UBERON:0000916,6.09e-16,49;UBERON:0002365,2.82e-14,25;UBERON:0002330,2.82e-14,25;UBERON:0003929,5.20e-13,55;UBERON:0001007,1.12e-11,116;UBERON:0001555,1.12e-11,116;UBERON:0007026,1.12e-11,116;UBERON:0004119,3.45e-11,118;UBERON:0000925,3.45e-11,118;UBERON:0006595,3.45e-11,118;UBERON:0009569,6.98e-11,66;UBERON:0004921,7.08e-11,114;UBERON:0003104,1.58e-10,61;UBERON:0009142,1.58e-10,61;UBERON:0002368,1.77e-10,60;UBERON:0005256,5.31e-10,45;UBERON:0005911,5.54e-10,69;UBERON:0002530,1.32e-09,65;UBERON:0000490,5.47e-09,66;UBERON:0005177,1.32e-08,79;UBERON:0000949,2.19e-08,72;UBERON:0000160,1.14e-07,31|phase1_expression=0.320297694209588,0.697950815278722,1.36499771816861,0.30246421130683,0,4.70061961353291,2.80335168714631,0,0.563154888606667,0.468129052643987,3.76679530096111,3.5099749957948,0,0,0,0,0,0.157731082679119,0,0.84877930359606,0.850432901510698,0.397163804803541,0.522399578277871,2.07990149631429,1.14704640533585,0.57423196411502,2.15380998079537,2.37018355954478,0.950117097281869,1.51218077855958,1.55211357458713,2.54012269383853,3.69038872550742,0,11.2652131702997,10.6390173029435,10.8209758819056,0,0,0,0,0,0,0,0.304130793658544,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.677689064138264,0,0,0,0,0.599200221036809,0,0.311068836925433,0.540023753326763,0,0.285650984403804,0,0.61245399607477,0.766763768145891,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0.186399445825301,0.151452386666368,0.151143120213571,0.289864488701678,14.6272059086836,5.439770669662,21.5881276655127,9.09686984426737,9.40856462904405,3.65155492342555,0,0.519572009205738,0,0,0,0,0,0.432982082022428,0,0.505524445014783,3.76806803072898,0.258937883647172,0.593768556259299,2.60227990149204,5.78484408793068,5.76538743140146,6.78251882486802,0.823120949949934,1.25666591329675,0,0.289198713839823,0.884610551949874,0,0,0.484875253135222,1.86391761218122,0,0,0.766371165625774,0.479260498023681,0,0.508280908292259,0,0,0,0,0,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0,0.650602214813519,0.919608417733892,1.0803727788321,0.452114453507145,0.544291993210623,0.512454881139399,0.468508622798644,0,2.80238390812695,0.378212160335639,0.175951124163949,0.657587197282725,0.278047249225598,0.348252166522167,0.823128545631774,1.39323986772945,0.702213187313235,0.257347907114715,0.568326998791185,1.03562886267751,0.938104239924385,0.180062061461015,0.710234206755631,0,0.617068451549513,0.232533944750408,0.536546802799238,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0,0,0,0,4.23120906661671,1.06644125267617,1.62565670302307,2.70621668776396,3.83198696784351,3.11329261382818,1.52180500890047,0.949058123089023,1.4822905925161,1.00534083520108,0.994782360205754,0.779856348476481,1.79763881730844,1.08069024937347,0.995706366271836,1.70701110857774,1.48523066392647,1.1270773567308,1.01825663922657,0.581857461502877,0.841629838683823,1.45444035385792,2.06654207171443,2.66897837330337,3.45512058981041,11.2651998293117,1.33476084572875,0.982794975566015,3.82265591054251,2.84004169943904,2.17059443777175,4.32863948028414,3.74004978686054,2.7562988551756,11.5315793538994,4.31304619582064,6.32639611036456,5.61667811606209,18.9434158460334,12.19902411949,11.0962009913574,0.369506380333209,1.51593129416388,1.14075483509418,1.01847051465113,0.469380496577004,0.167506257441816,0.476087281772027,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0.551873492609465,0,0.117211686592203,0.163934945376675,0,0.315508219416257,0.780877488593277,0.646270193198397,0.477937595905104,0.222798674082394,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.283880170416537,0.35613120733451,0,0,0,2.18502572539483,2.41858845571801,0.565815239267694,0,0.922305443831782,0,0.363533729477506,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,1.03486947026204,0.643011105094777,0.354680467284547,0,0.164549020602121,0.304464949114599,0.23467170806371,0,0.220528398054962,0.49465875882444,0.322928853391811,0.784068024066026,0.954978752025092,0.164140899745061,2.33184669303881,0,0.170870880797853,0,0.370389054739423,0.376736914009382,0,0,0,0,0.276399947608848,0,0.632671987162271,1.21991680276109,1.62008011232702,1.04544148007234,0.655087691238533,0.674321731924103,0.991841468704031,0.26175594198403,1.42576470620972,0.621339313086926,0.56369293868419,2.24274819065968,1.98550188548517,0.388902376688095,1.03327858782185,0.675824501963113,0.58678619322877,1.43224823328345,2.41176492179135,1.20792060413003,0.864090018773596,0.316011120628178,0.202725215290164,2.46506297195585,2.07873316764472,1.61124026100733,2.98022032171897,0.961563596159751,0.886137163047463,1.31256384932592,0.914481679859998,0.907435666231565,0.0974578807397524,0.673482891482306,0.116876902181569,0,4.88369097422942,9.15081337416652,2.68615386182526,0.19318959403219,0,0.36630324853453,0.214368379079066,2.00628841614145,0,0,0,0,0,0,0,0,0,0,1.55681021376265,0,0.853668028770671,0.972426868273176,2.30574478890781,2.02227859295016,0.44449345560323,1.23621034343337,0.64183841918363,1.01078884705519,0.50695859978048,1.13175804831646,0.842773567228942,1.15245274328765,0.918967503289812,0.952587382566147,0.927074607558844,1.73618298417335,1.23625770240992,1.03039244094078,0,0.70990322463735,1.43061713968393,0.436039249896986,1.12931256498397,0.846146078916765,0.365855945745545,0.263069711437843,0.543216455383447,0.561142271657738,0.949080144993393,1.57607171800902,0.409231043169689,1.08455788830176,0.385813221962283,0.499621155875892,0.701794825336225,0,0.57386499620653,0.220591419119515,0.463735671240843|short_description=p2@Shmt1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20425 | |||
|HGNC= | |||
|MCL_coexpression_id=2694 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P50431 | |||
|association_with_transcript=23bp_to_ENSMUST00000018744,NM_009171,uc007jgo.1,uc007jgp.1_5end | |||
|cluster_id=chr11:60624730..60624743,- | |||
|description=CAGE_peak_2_at_Shmt1_5end | |||
|id=chr11:60624730..60624743,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!5.87e-13!23;UBERON:0009856!5.87e-13!23;UBERON:0002107!1.34e-12!22;UBERON:0007499!1.34e-12!22;UBERON:0006925!1.34e-12!22;UBERON:0009497!1.34e-12!22;UBERON:0000015!1.34e-12!22;UBERON:0002423!1.34e-12!22;UBERON:0006235!1.34e-12!22;UBERON:0008835!1.34e-12!22;UBERON:0003894!1.34e-12!22;UBERON:0004161!1.34e-12!22;UBERON:0008836!1.34e-12!22;UBERON:0005172!6.48e-12!49;UBERON:0005173!6.48e-12!49;UBERON:0002417!6.48e-12!49;UBERON:0000916!6.48e-12!49;UBERON:0002365!5.94e-11!25;UBERON:0002330!5.94e-11!25;UBERON:0003929!1.07e-10!55;UBERON:0002368!5.48e-10!60;UBERON:0001007!1.05e-09!128;UBERON:0001555!1.05e-09!128;UBERON:0007026!1.05e-09!128;UBERON:0002530!1.70e-09!65;UBERON:0004119!3.48e-09!130;UBERON:0000925!3.48e-09!130;UBERON:0006595!3.48e-09!130;UBERON:0004921!3.86e-09!126;UBERON:0004185!3.86e-09!126;UBERON:0009569!4.37e-08!66;UBERON:0005911!5.10e-08!69;UBERON:0000949!1.55e-07!72;UBERON:0005057!9.93e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009854,7.29e-18,23;UBERON:0009856,7.29e-18,23;UBERON:0002107,2.70e-17,22;UBERON:0007499,2.70e-17,22;UBERON:0006925,2.70e-17,22;UBERON:0009497,2.70e-17,22;UBERON:0000015,2.70e-17,22;UBERON:0002423,2.70e-17,22;UBERON:0006235,2.70e-17,22;UBERON:0008835,2.70e-17,22;UBERON:0003894,2.70e-17,22;UBERON:0004161,2.70e-17,22;UBERON:0008836,2.70e-17,22;UBERON:0005172,6.09e-16,49;UBERON:0005173,6.09e-16,49;UBERON:0002417,6.09e-16,49;UBERON:0000916,6.09e-16,49;UBERON:0002365,2.82e-14,25;UBERON:0002330,2.82e-14,25;UBERON:0003929,5.20e-13,55;UBERON:0001007,1.12e-11,116;UBERON:0001555,1.12e-11,116;UBERON:0007026,1.12e-11,116;UBERON:0004119,3.45e-11,118;UBERON:0000925,3.45e-11,118;UBERON:0006595,3.45e-11,118;UBERON:0009569,6.98e-11,66;UBERON:0004921,7.08e-11,114;UBERON:0003104,1.58e-10,61;UBERON:0009142,1.58e-10,61;UBERON:0002368,1.77e-10,60;UBERON:0005256,5.31e-10,45;UBERON:0005911,5.54e-10,69;UBERON:0002530,1.32e-09,65;UBERON:0000490,5.47e-09,66;UBERON:0005177,1.32e-08,79;UBERON:0000949,2.19e-08,72;UBERON:0000160,1.14e-07,31 | |||
|phase1_expression=0.320297694209588,0.697950815278722,1.36499771816861,0.30246421130683,0,4.70061961353291,2.80335168714631,0,0.563154888606667,0.468129052643987,3.76679530096111,3.5099749957948,0,0,0,0,0,0.157731082679119,0,0.84877930359606,0.850432901510698,0.397163804803541,0.522399578277871,2.07990149631429,1.14704640533585,0.57423196411502,2.15380998079537,2.37018355954478,0.950117097281869,1.51218077855958,1.55211357458713,2.54012269383853,3.69038872550742,0,11.2652131702997,10.6390173029435,10.8209758819056,0,0,0,0,0,0,0,0.304130793658544,0,0,0.436050312760893,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.677689064138264,0,0,0,0,0.599200221036809,0,0.311068836925433,0.540023753326763,0,0.285650984403804,0,0.61245399607477,0.766763768145891,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0.186399445825301,0.151452386666368,0.151143120213571,0.289864488701678,14.6272059086836,5.439770669662,21.5881276655127,9.09686984426737,9.40856462904405,3.65155492342555,0,0.519572009205738,0,0,0,0,0,0.432982082022428,0,0.505524445014783,3.76806803072898,0.258937883647172,0.593768556259299,2.60227990149204,5.78484408793068,5.76538743140146,6.78251882486802,0.823120949949934,1.25666591329675,0,0.289198713839823,0.884610551949874,0,0,0.484875253135222,1.86391761218122,0,0,0.766371165625774,0.479260498023681,0,0.508280908292259,0,0,0,0,0,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0,0.650602214813519,0.919608417733892,1.0803727788321,0.452114453507145,0.544291993210623,0.512454881139399,0.468508622798644,0,2.80238390812695,0.378212160335639,0.175951124163949,0.657587197282725,0.278047249225598,0.348252166522167,0.823128545631774,1.39323986772945,0.702213187313235,0.257347907114715,0.568326998791185,1.03562886267751,0.938104239924385,0.180062061461015,0.710234206755631,0,0.617068451549513,0.232533944750408,0.536546802799238,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0,0,0,0,4.23120906661671,1.06644125267617,1.62565670302307,2.70621668776396,3.83198696784351,3.11329261382818,1.52180500890047,0.949058123089023,1.4822905925161,1.00534083520108,0.994782360205754,0.779856348476481,1.79763881730844,1.08069024937347,0.995706366271836,1.70701110857774,1.48523066392647,1.1270773567308,1.01825663922657,0.581857461502877,0.841629838683823,1.45444035385792,2.06654207171443,2.66897837330337,3.45512058981041,11.2651998293117,1.33476084572875,0.982794975566015,3.82265591054251,2.84004169943904,2.17059443777175,4.32863948028414,3.74004978686054,2.7562988551756,11.5315793538994,4.31304619582064,6.32639611036456,5.61667811606209,18.9434158460334,12.19902411949,11.0962009913574,0.369506380333209,1.51593129416388,1.14075483509418,1.01847051465113,0.469380496577004,0.167506257441816,0.476087281772027,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0.551873492609465,0,0.117211686592203,0.163934945376675,0,0.315508219416257,0.780877488593277,0.646270193198397,0.477937595905104,0.222798674082394,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.283880170416537,0.35613120733451,0,0,0,2.18502572539483,2.41858845571801,0.565815239267694,0,0.922305443831782,0,0.363533729477506,0,0.316036757935816,0,0,0.340439605753788,0.720244376125241,1.03486947026204,0.643011105094777,0.354680467284547,0,0.164549020602121,0.304464949114599,0.23467170806371,0,0.220528398054962,0.49465875882444,0.322928853391811,0.784068024066026,0.954978752025092,0.164140899745061,2.33184669303881,0,0.170870880797853,0,0.370389054739423,0.376736914009382,0,0,0,0,0.276399947608848,0,0.632671987162271,1.21991680276109,1.62008011232702,1.04544148007234,0.655087691238533,0.674321731924103,0.991841468704031,0.26175594198403,1.42576470620972,0.621339313086926,0.56369293868419,2.24274819065968,1.98550188548517,0.388902376688095,1.03327858782185,0.675824501963113,0.58678619322877,1.43224823328345,2.41176492179135,1.20792060413003,0.864090018773596,0.316011120628178,0.202725215290164,2.46506297195585,2.07873316764472,1.61124026100733,2.98022032171897,0.961563596159751,0.886137163047463,1.31256384932592,0.914481679859998,0.907435666231565,0.0974578807397524,0.673482891482306,0.116876902181569,0,4.88369097422942,9.15081337416652,2.68615386182526,0.19318959403219,0,0.36630324853453,0.214368379079066,2.00628841614145,0,0,0,0,0,0,0,0,0,0,1.55681021376265,0,0.853668028770671,0.972426868273176,2.30574478890781,2.02227859295016,0.44449345560323,1.23621034343337,0.64183841918363,1.01078884705519,0.50695859978048,1.13175804831646,0.842773567228942,1.15245274328765,0.918967503289812,0.952587382566147,0.927074607558844,1.73618298417335,1.23625770240992,1.03039244094078,0,0.70990322463735,1.43061713968393,0.436039249896986,1.12931256498397,0.846146078916765,0.365855945745545,0.263069711437843,0.543216455383447,0.561142271657738,0.949080144993393,1.57607171800902,0.409231043169689,1.08455788830176,0.385813221962283,0.499621155875892,0.701794825336225,0,0.57386499620653,0.220591419119515,0.463735671240843 | |||
|short_description=p2@Shmt1 | |||
}} |
Revision as of 05:42, 6 August 2015
Short description: | p2@Shmt1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Shmt1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2694 |
Association with transcript: | 23bp_to_ENSMUST00000018744, NM_009171, uc007jgo.1, uc007jgp.1_5end |
EntrezGene: | 20425 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data