FFCP PHASE1:Hg19::chr19:1248547..1248562,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:1248547..1248562,+
|short_description=p6@MIDN
|description=CAGE_peak_6_at_MIDN_5end
|association_with_transcript=0bp_to_ENST00000300952,NM_177401,uc002lrp...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=90007 | |EntrezGene=90007 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16298 | |HGNC=16298 | ||
|TSSclassifier=strong | |||
|UniProt=Q504T8 | |UniProt=Q504T8 | ||
|association_with_transcript=0bp_to_ENST00000300952,NM_177401,uc002lrp.2_5end | |||
|cluster_id=chr19:1248547..1248562,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_6_at_MIDN_5end | |||
|id=chr19:1248547..1248562,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.08e-15!42;CL:0000766!7.37e-15!76;CL:0000860!1.35e-14!45;CL:0000763!4.93e-13!112;CL:0000049!4.93e-13!112;CL:0000738!8.34e-13!140;CL:0000037!1.16e-12!172;CL:0000566!1.16e-12!172;CL:0000988!6.09e-12!182;CL:0000557!1.16e-11!71;CL:0002032!3.51e-11!165;CL:0000837!3.51e-11!165;CL:0000839!1.02e-10!70;CL:0002009!1.75e-09!65;CL:0002194!5.51e-09!63;CL:0000576!5.51e-09!63;CL:0000040!5.51e-09!63;CL:0000559!5.51e-09!63;CL:0002031!5.94e-09!124;CL:0002087!6.41e-08!119;CL:0000094!5.01e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.64e-13;33!CL:0002057;4.64e-13;33!CL:0000576;1.12e-11;48!CL:0000094;5.87e-11;8!CL:0000766;8.36e-11;69!CL:0000473;5.41e-09;39!CL:0000234;5.41e-09;39!CL:0002393;8.20e-08;6!CL:0002397;8.20e-08;6!CL:0000081;2.99e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.20e-22,42;CL:0002057,6.20e-22,42;CL:0000766,3.54e-21,72;CL:0000738,2.97e-18,136;CL:0000473,1.22e-17,48;CL:0000234,1.22e-17,48;CL:0000037,1.63e-17,168;CL:0000988,4.07e-17,177;CL:0000763,9.53e-17,108;CL:0000049,9.53e-17,108;CL:0000557,2.09e-15,67;CL:0002032,8.32e-15,161;CL:0000837,8.32e-15,161;CL:0000839,1.40e-13,66;CL:0002009,3.45e-13,61;CL:0002194,7.15e-13,59;CL:0000576,7.15e-13,59;CL:0000040,7.15e-13,59;CL:0000559,7.15e-13,59;CL:0002087,1.10e-11,115;CL:0002031,2.04e-11,120;CL:0000094,6.34e-11,8;CL:0002393,3.55e-10,9;CL:0002397,3.55e-10,9;CL:0000047,4.53e-08,8;CL:0000081,3.12e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.07e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.91e-13!102;UBERON:0003061!9.91e-13!102;UBERON:0007023!7.64e-11!115;UBERON:0002371!1.47e-10!80;UBERON:0001474!1.59e-10!86;UBERON:0002193!2.61e-10!112;UBERON:0005743!3.39e-09!86;UBERON:0000073!7.08e-09!94;UBERON:0001016!7.08e-09!94;UBERON:0001017!9.19e-09!82;UBERON:0004765!4.64e-07!101;UBERON:0001434!4.64e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.74e-15,98;UBERON:0003061,5.74e-15,98;UBERON:0002371,7.05e-14,76;UBERON:0001474,1.39e-12,82;UBERON:0002193,4.17e-12,108;UBERON:0004765,2.63e-10,90;UBERON:0002405,3.34e-10,93;UBERON:0001434,1.55e-08,100 | |||
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| ||
|short_description=p6@MIDN | |||
}} | }} |
Latest revision as of 17:50, 15 September 2015
Short description: | p6@MIDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MIDN_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 0bp_to_ENST00000300952, NM_177401, uc002lrp.2_5end |
EntrezGene: | MIDN |
HGNC: | 16298 |
UniProt: | Q504T8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.20e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.20e-22 | 42 |
myeloid leukocyte | 3.54e-21 | 72 |
leukocyte | 2.97e-18 | 136 |
defensive cell | 1.22e-17 | 48 |
phagocyte | 1.22e-17 | 48 |
hematopoietic stem cell | 1.63e-17 | 168 |
hematopoietic cell | 4.07e-17 | 177 |
myeloid cell | 9.53e-17 | 108 |
common myeloid progenitor | 9.53e-17 | 108 |
granulocyte monocyte progenitor cell | 2.09e-15 | 67 |
hematopoietic oligopotent progenitor cell | 8.32e-15 | 161 |
hematopoietic multipotent progenitor cell | 8.32e-15 | 161 |
myeloid lineage restricted progenitor cell | 1.40e-13 | 66 |
macrophage dendritic cell progenitor | 3.45e-13 | 61 |
monopoietic cell | 7.15e-13 | 59 |
monocyte | 7.15e-13 | 59 |
monoblast | 7.15e-13 | 59 |
promonocyte | 7.15e-13 | 59 |
nongranular leukocyte | 1.10e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 2.04e-11 | 120 |
granulocyte | 6.34e-11 | 8 |
intermediate monocyte | 3.55e-10 | 9 |
CD14-positive, CD16-positive monocyte | 3.55e-10 | 9 |
neuronal stem cell | 4.53e-08 | 8 |
blood cell | 3.12e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.74e-15 | 98 |
blood island | 5.74e-15 | 98 |
bone marrow | 7.05e-14 | 76 |
bone element | 1.39e-12 | 82 |
hemolymphoid system | 4.17e-12 | 108 |
skeletal element | 2.63e-10 | 90 |
immune system | 3.34e-10 | 93 |
skeletal system | 1.55e-08 | 100 |