FFCP PHASE1:Hg19::chr2:233404417..233404428,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1146 | |EntrezGene=1146 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1967 | |HGNC=1967 | ||
|TSSclassifier=strong | |||
|UniProt=P07510,Q14DU4 | |UniProt=P07510,Q14DU4 | ||
|association_with_transcript=-8bp_to_ENST00000389494,ENST00000485094,ENST00000541596,NM_005199,uc002vsx.1,uc010fyd.2,uc010fye.1_5end | |association_with_transcript=-8bp_to_ENST00000389494,ENST00000485094,ENST00000541596,NM_005199,uc002vsx.1,uc010fyd.2,uc010fye.1_5end | ||
|cluster_id=chr2:233404417..233404428,+ | |||
|coexpression_cluster_id=C134 | |coexpression_cluster_id=C134 | ||
|description=CAGE_peak_3_at_CHRNG_5end | |description=CAGE_peak_3_at_CHRNG_5end | ||
Latest revision as of 21:49, 15 September 2015
| Short description: | p3@CHRNG |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_CHRNG_5end |
| Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
| Association with transcript: | -8bp_to_ENST00000389494, ENST00000485094, ENST00000541596, NM_005199, uc002vsx.1, uc010fyd.2, uc010fye.1_5end |
| EntrezGene: | CHRNG |
| HGNC: | 1967 |
| UniProt: | P07510Q14DU4 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@CHRNG |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| cell of skeletal muscle | 4.87e-29 | 9 |
Showing 1 to 1 of 1 entries
| Ontology term | p-value | n |
|---|---|---|
| muscle structure | 1.34e-22 | 2 |
| muscle organ | 1.34e-22 | 2 |
| throat | 7.44e-22 | 2 |
| skeletal muscle tissue | 1.02e-12 | 62 |
| striated muscle tissue | 1.02e-12 | 62 |
| myotome | 1.02e-12 | 62 |
| muscle tissue | 2.77e-12 | 64 |
| musculature | 2.77e-12 | 64 |
| musculature of body | 2.77e-12 | 64 |
| hindlimb bud | 3.27e-12 | 1 |
Showing 1 to 10 of 62 entries
