FFCP PHASE1:Hg19::chr2:234216516..234216542,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6295 | |EntrezGene=6295 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10521 | |HGNC=10521 | ||
|TSSclassifier=strong | |||
|UniProt=C9JSX4 | |UniProt=C9JSX4 | ||
|association_with_transcript=0bp_to_ENST00000415974,ENST00000462487,ENST00000471884,ENST00000479450_5end | |association_with_transcript=0bp_to_ENST00000415974,ENST00000462487,ENST00000471884,ENST00000479450_5end | ||
|cluster_id=chr2:234216516..234216542,+ | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_SAG_5end | |description=CAGE_peak_1_at_SAG_5end | ||
|id=chr2:234216516..234216542,+ | |id=chr2:234216516..234216542,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.52e-87;3!UBERON:0006238;2.63e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;8.38e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,8.38e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001882!3.16e-29!1;UBERON:0005403!3.16e-29!1;UBERON:0000966!1.02e-23!5;UBERON:0005388!1.02e-23!5;UBERON:0001802!1.02e-23!5;UBERON:0001905!1.78e-15!2;UBERON:0002757!1.78e-15!2;UBERON:0010134!1.78e-15!2;UBERON:0002784!1.78e-15!2;UBERON:0005408!1.78e-15!2;UBERON:0001899!1.78e-15!2;UBERON:0003127!2.05e-15!2;UBERON:0000970!1.43e-13!20;UBERON:0002104!5.82e-13!21;UBERON:0000020!6.73e-12!23;UBERON:0001032!1.97e-11!24;UBERON:0004456!1.97e-11!24;UBERON:0003296!2.11e-08!4;UBERON:0010133!2.11e-08!4;UBERON:0000369!2.43e-08!4;UBERON:0002435!2.43e-08!4;UBERON:0000204!2.43e-08!4;UBERON:0010082!2.43e-08!4;UBERON:0003056!8.45e-08!61;UBERON:0000019!5.66e-07!19;UBERON:0000047!5.66e-07!19;UBERON:0004088!5.66e-07!19;UBERON:0003072!5.66e-07!19;UBERON:0003071!5.66e-07!19;UBERON:0004128!5.66e-07!19;UBERON:0000349!6.39e-07!5;UBERON:0002046!6.77e-07!5;UBERON:0004117!6.77e-07!5;UBERON:0007689!6.77e-07!5;UBERON:0007123!6.77e-07!5;UBERON:0003091!6.77e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.74e-53;5!UBERON:0005388;3.74e-53;5!UBERON:0001802;3.74e-53;5!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0000019;5.66e-15;19!UBERON:0000047;5.66e-15;19!UBERON:0004088;5.66e-15;19!UBERON:0010230;5.66e-15;19!UBERON:0001456;1.16e-13;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.52e-44,6;UBERON:0005388,1.52e-44,6;UBERON:0001802,1.52e-44,6;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0000019,2.76e-14,20;UBERON:0000047,2.76e-14,20;UBERON:0010312,2.76e-14,20;UBERON:0004088,2.76e-14,20;UBERON:0010230,2.76e-14,20;UBERON:0003072,2.76e-14,20;UBERON:0004128,2.76e-14,20;UBERON:0003071,2.76e-14,20;UBERON:0001456,4.26e-13,22;UBERON:0005085,1.25e-09,31 | |||
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|short_description=p1@SAG | |short_description=p1@SAG | ||
}} | }} |
Latest revision as of 22:54, 15 September 2015
Short description: | p1@SAG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAG_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000415974, ENST00000462487, ENST00000471884, ENST00000479450_5end |
EntrezGene: | SAG |
HGNC: | 10521 |
UniProt: | C9JSX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 1.52e-44 | 6 |
photoreceptor array | 1.52e-44 | 6 |
posterior segment of eyeball | 1.52e-44 | 6 |
eye | 3.84e-29 | 21 |
visual system | 3.84e-29 | 21 |
sense organ | 1.16e-25 | 24 |
sensory system | 1.16e-25 | 24 |
entire sense organ system | 1.16e-25 | 24 |
camera-type eye | 2.76e-14 | 20 |
simple eye | 2.76e-14 | 20 |
immature eye | 2.76e-14 | 20 |
ocular region | 2.76e-14 | 20 |
eyeball of camera-type eye | 2.76e-14 | 20 |
optic cup | 2.76e-14 | 20 |
optic vesicle | 2.76e-14 | 20 |
eye primordium | 2.76e-14 | 20 |
face | 4.26e-13 | 22 |
ectodermal placode | 1.25e-09 | 31 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 8.38e-07 | 11 |