FFCP PHASE1:Hg19::chr11:118213455..118213462,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=915 | |EntrezGene=915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1673 | |HGNC=1673 | ||
|TSSclassifier=strong | |||
|UniProt=P04234,B0YIY4,A8MVP6 | |UniProt=P04234,B0YIY4,A8MVP6 | ||
|association_with_transcript=0bp_to_ENST00000300692,NM_000732,NM_001040651,uc001pss.1,uc001pst.1_5end | |association_with_transcript=0bp_to_ENST00000300692,NM_000732,NM_001040651,uc001pss.1,uc001pst.1_5end | ||
|cluster_id=chr11:118213455..118213462,- | |||
|coexpression_cluster_id=C141 | |||
|description=CAGE_peak_4_at_CD3D_5end | |description=CAGE_peak_4_at_CD3D_5end | ||
|id=chr11:118213455..118213462,- | |id=chr11:118213455..118213462,- | ||
|ontology_enrichment_celltype=CL:0000084!8.27e-35!25;CL:0000827!8.27e-35!25;CL:0000791!2.13e-28!18;CL:0000789!2.13e-28!18;CL:0002420!2.13e-28!18;CL:0002419!2.13e-28!18;CL:0000790!2.13e-28!18;CL:0000625!2.20e-23!11;CL:0000838!3.44e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000898!9.72e-11!3;CL:0000624!7.62e-09!6;CL:0002087!1.34e-07!119;CL:0000815!1.42e-07!2;CL:0000792!1.42e-07!2;CL:0002677!1.42e-07!2;CL:0000037!7.15e-07!172;CL:0000566!7.15e-07!172 | |ontology_enrichment_celltype=CL:0000084!8.27e-35!25;CL:0000827!8.27e-35!25;CL:0000791!2.13e-28!18;CL:0000789!2.13e-28!18;CL:0002420!2.13e-28!18;CL:0002419!2.13e-28!18;CL:0000790!2.13e-28!18;CL:0000625!2.20e-23!11;CL:0000838!3.44e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000898!9.72e-11!3;CL:0000624!7.62e-09!6;CL:0002087!1.34e-07!119;CL:0000815!1.42e-07!2;CL:0000792!1.42e-07!2;CL:0002677!1.42e-07!2;CL:0000037!7.15e-07!172;CL:0000566!7.15e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000084;4.89e-37;25!CL:0000625;1.23e-34;11!CL:0000791;3.67e-27;18!CL:0000789;3.67e-27;18!CL:0002419;3.67e-27;18!CL:0000542;3.84e-10;53!CL:0000895;3.25e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.66e-37,25;CL:0000827,4.66e-37,25;CL:0000625,1.52e-34,11;CL:0000791,3.56e-27,18;CL:0000789,3.56e-27,18;CL:0002420,3.56e-27,18;CL:0002419,3.56e-27,18;CL:0000790,3.56e-27,18;CL:0000838,6.94e-17,52;CL:0000542,1.57e-16,53;CL:0000051,1.57e-16,53;CL:0000810,2.16e-09,1;CL:0000895,2.16e-09,1;CL:0002436,2.16e-09,1;CL:0002427,2.16e-09,1;CL:0002428,2.16e-09,1;CL:0002429,2.16e-09,1;CL:0002433,2.16e-09,1;CL:0002431,2.16e-09,1;CL:0002432,2.16e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000790;3.67e-27;18!CL:0000051;3.84e-10;53!CL:0002427;3.25e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.74e-12!15;UBERON:0000179!6.74e-12!15;UBERON:0000463!6.74e-12!15;UBERON:0004177!1.31e-11!7;UBERON:0002370!1.35e-08!4;UBERON:0005058!1.35e-08!4;UBERON:0009113!1.35e-08!4;UBERON:0003295!1.35e-08!4;UBERON:0005562!1.35e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.68e-17;2!UBERON:0005058;1.68e-17;2!UBERON:0009113;1.68e-17;2!UBERON:0004177;1.58e-07;5!UBERON:0005057;1.58e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.15e-19,4;UBERON:0005058,5.15e-19,4;UBERON:0009113,5.15e-19,4;UBERON:0003295,5.15e-19,4;UBERON:0005562,5.15e-19,4;UBERON:0003351,7.20e-13,6;UBERON:0004177,4.18e-11,7;UBERON:0005057,4.18e-11,7;UBERON:0000974,6.44e-08,10;UBERON:0003408,6.44e-08,10;UBERON:0001042,6.44e-08,10;UBERON:0009145,6.44e-08,10;UBERON:0006562,3.08e-07,11;UBERON:0009722,3.08e-07,11;UBERON:0007690,3.08e-07,11 | |||
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| ||
|short_description=p4@CD3D | |short_description=p4@CD3D | ||
}} | }} |
Latest revision as of 23:59, 15 September 2015
Short description: | p4@CD3D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CD3D_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | 0bp_to_ENST00000300692, NM_000732, NM_001040651, uc001pss.1, uc001pst.1_5end |
EntrezGene: | CD3D |
HGNC: | 1673 |
UniProt: | P04234B0YIY4A8MVP6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.66e-37 | 25 |
pro-T cell | 4.66e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.52e-34 | 11 |
mature alpha-beta T cell | 3.56e-27 | 18 |
alpha-beta T cell | 3.56e-27 | 18 |
immature T cell | 3.56e-27 | 18 |
mature T cell | 3.56e-27 | 18 |
immature alpha-beta T cell | 3.56e-27 | 18 |
lymphoid lineage restricted progenitor cell | 6.94e-17 | 52 |
lymphocyte | 1.57e-16 | 53 |
common lymphoid progenitor | 1.57e-16 | 53 |
CD4-positive, alpha-beta thymocyte | 2.16e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 2.16e-09 | 1 |
mature CD4 single-positive thymocyte | 2.16e-09 | 1 |
resting double-positive thymocyte | 2.16e-09 | 1 |
double-positive blast | 2.16e-09 | 1 |
CD69-positive double-positive thymocyte | 2.16e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 2.16e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 2.16e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 2.16e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 5.15e-19 | 4 |
hemolymphoid system gland | 5.15e-19 | 4 |
thymic region | 5.15e-19 | 4 |
pharyngeal gland | 5.15e-19 | 4 |
thymus primordium | 5.15e-19 | 4 |
pharyngeal epithelium | 7.20e-13 | 6 |
hemopoietic organ | 4.18e-11 | 7 |
immune organ | 4.18e-11 | 7 |
neck | 6.44e-08 | 10 |
gland of gut | 6.44e-08 | 10 |
chordate pharynx | 6.44e-08 | 10 |
pharyngeal region of foregut | 6.44e-08 | 10 |
pharynx | 3.08e-07 | 11 |
entire pharyngeal arch endoderm | 3.08e-07 | 11 |
early pharyngeal endoderm | 3.08e-07 | 11 |