FFCP PHASE1:Hg19::chr17:48271320..48271413,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000476387_5end | |association_with_transcript=5bp_to_ENST00000476387_5end | ||
|cluster_id=chr17:48271320..48271413,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_21_at_COL1A1_5end | |description=CAGE_peak_21_at_COL1A1_5end | ||
|id=chr17:48271320..48271413,- | |id=chr17:48271320..48271413,- | ||
|ontology_enrichment_celltype=CL:0000055!6.21e-40!180;CL:0000057!1.28e-23!75;CL:0000183!3.23e-18!59;CL:0000680!7.31e-18!57;CL:0000056!7.31e-18!57;CL:0000355!7.31e-18!57;CL:0000187!3.72e-17!54;CL:0000393!1.63e-14!60;CL:0000211!1.63e-14!60;CL:0000192!5.49e-13!42;CL:0000514!5.49e-13!42;CL:0000048!2.18e-10!430;CL:0000723!1.87e-09!436;CL:0000359!7.22e-09!32;CL:0000034!1.06e-08!444;CL:0000222!4.30e-08!119;CL:0002620!4.40e-08!23;CL:0002334!1.32e-07!12;CL:0002371!2.20e-07!591;CL:0000144!3.75e-07!625;CL:0002494!8.52e-07!16 | |ontology_enrichment_celltype=CL:0000055!6.21e-40!180;CL:0000057!1.28e-23!75;CL:0000183!3.23e-18!59;CL:0000680!7.31e-18!57;CL:0000056!7.31e-18!57;CL:0000355!7.31e-18!57;CL:0000187!3.72e-17!54;CL:0000393!1.63e-14!60;CL:0000211!1.63e-14!60;CL:0000192!5.49e-13!42;CL:0000514!5.49e-13!42;CL:0000048!2.18e-10!430;CL:0000723!1.87e-09!436;CL:0000359!7.22e-09!32;CL:0000034!1.06e-08!444;CL:0000222!4.30e-08!119;CL:0002620!4.40e-08!23;CL:0002334!1.32e-07!12;CL:0002371!2.20e-07!591;CL:0000144!3.75e-07!625;CL:0002494!8.52e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000187;6.02e-12;55!CL:0000192;2.80e-11;43!CL:0000134;2.49e-10;55!CL:0000723;1.87e-09;61!CL:0002320;2.21e-09;188!CL:0000393;2.54e-09;61!CL:0000211;2.54e-09;61!CL:0000048;3.27e-09;58!CL:0000359;3.75e-09;32!CL:0000057;5.07e-09;73!CL:0002334;5.07e-09;12!CL:0000499;5.86e-08;28!CL:0000327;2.05e-07;15!CL:0002494;5.89e-07;16!CL:0000034;8.92e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.36e-23,76;CL:0000680,5.78e-21,58;CL:0000056,5.78e-21,58;CL:0000355,5.78e-21,58;CL:0000187,4.10e-20,55;CL:0000048,8.40e-18,427;CL:0000723,8.74e-17,433;CL:0000393,1.91e-16,61;CL:0000211,1.91e-16,61;CL:0000034,1.73e-15,441;CL:0000192,4.01e-15,43;CL:0000514,4.01e-15,43;CL:0000359,8.92e-10,32;CL:0000222,1.89e-09,121;CL:0002334,8.32e-09,12;CL:0000499,6.56e-08,28;CL:0002320,7.36e-08,361;CL:0000327,2.26e-07,15;CL:0002494,4.69e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;8.33e-12;58!CL:0000514;2.80e-11;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.98e-21!83;UBERON:0002329!6.98e-21!83;UBERON:0003077!6.98e-21!83;UBERON:0003059!6.98e-21!83;UBERON:0007282!6.98e-21!83;UBERON:0009618!6.98e-21!83;UBERON:0007285!6.98e-21!83;UBERON:0004290!6.08e-19!70;UBERON:0002385!1.88e-18!63;UBERON:0001015!1.88e-18!63;UBERON:0000383!1.88e-18!63;UBERON:0001134!1.94e-18!61;UBERON:0002036!1.94e-18!61;UBERON:0003082!1.94e-18!61;UBERON:0005256!1.43e-16!143;UBERON:0000486!8.52e-15!82;UBERON:0002100!5.06e-12!216;UBERON:0000475!4.02e-10!365;UBERON:0004872!1.20e-08!84;UBERON:0003104!2.48e-08!238;UBERON:0009142!2.48e-08!238;UBERON:0000490!5.11e-08!138;UBERON:0003102!5.68e-08!95;UBERON:0001013!1.94e-07!14;UBERON:0002199!3.32e-07!45;UBERON:0002416!3.32e-07!45;UBERON:0000481!7.94e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.75e-09;198!UBERON:0002385;2.70e-08;31!UBERON:0001015;2.70e-08;31!UBERON:0000383;2.70e-08;31!UBERON:0003688;4.91e-07;6!UBERON:0002358;4.91e-07;6!UBERON:0003684;4.91e-07;6!UBERON:0001178;4.91e-07;6!UBERON:0001013;4.94e-07;14!UBERON:0002204;6.34e-07;70!UBERON:0004457;8.70e-07;9!UBERON:0000042;8.70e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.08e-21,62;UBERON:0002036,3.08e-21,62;UBERON:0003082,3.08e-21,62;UBERON:0002385,5.67e-20,64;UBERON:0001015,5.67e-20,64;UBERON:0000383,5.67e-20,64;UBERON:0007524,1.07e-19,73;UBERON:0002329,1.66e-19,71;UBERON:0003059,1.66e-19,71;UBERON:0007282,1.66e-19,71;UBERON:0004290,1.66e-19,71;UBERON:0009618,1.66e-19,71;UBERON:0007503,4.21e-19,78;UBERON:0003077,5.87e-19,72;UBERON:0007285,5.87e-19,72;UBERON:0005256,6.79e-16,122;UBERON:0000486,1.23e-15,83;UBERON:0003104,2.01e-14,160;UBERON:0009142,2.01e-14,160;UBERON:0004872,1.06e-08,83;UBERON:0000490,2.24e-08,148;UBERON:0000926,2.79e-08,315;UBERON:0004120,2.79e-08,315;UBERON:0006603,2.79e-08,315;UBERON:0002384,3.82e-08,371;UBERON:0002100,4.11e-08,199;UBERON:0003688,4.82e-07,6;UBERON:0002358,4.82e-07,6;UBERON:0003684,4.82e-07,6;UBERON:0001178,4.82e-07,6;UBERON:0001013,4.83e-07,14 | |||
|phase1_expression=23.9815460637135,17.3421424351696,37.2119626813364,32.0234554730017,38.885615215174,13.9574163856059,12.6649939084155,2.52687949370732,0.522371256399677,0.245733936501509,0,0.873765488520689,4.48403862988371,2.10402800032079,3.97676850873499,1.34465029290355,0,1.46062018077475,3.41552959153355,3.20114750999649,4.69201589861782,4.70182082217132,1.14494394852423,0.410623275218653,0.87879847716362,0,0.0821005894499457,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,2.68280343881454,3.96373941714944,16.62620100969,17.5468268722561,9.99440980829684,11.9292892057665,25.3050132557371,0.850813354476611,4.65631734671384,3.51339142772504,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,45.224447604274,20.6407734013265,3.70745706277013,51.9174283555353,13.8320669057359,4.48542080113846,6.4049397437823,9.12669929143492,4.04574346019696,3.90660949002095,3.43269996538263,10.1409476522104,9.21881479167998,1.17160715916898,0.936480230490962,0,1.79338416662161,0.587172493218824,0.485618833104395,0.280901613404497,1.02077085627447,0.859840221182376,3.82305390350332,86.7242085815899,60.827664602525,7.28129089550421,10.7792721272436,0.673344455816265,1.7516592782075,0.831192346452549,8.77955241761676,12.5659996277598,33.5030871361711,1.02088964844019,6.63741652048789,14.0947876620254,15.8948925869671,8.40255069036326,8.24420233907511,6.44101350114073,9.67807652924267,15.5274225661965,10.3283225470871,4.79624171063818,14.5438839854833,14.3864990568743,8.87523981291536,4.53384442024381,2.7129694769678,0.193260853163297,0,0,0,0,0.464775771478074,0.10366105501537,0,0.36497735907583,3.12899064659632,3.85944562915731,2.76269842704961,2.3218396401599,4.33127689001751,0,0,0,0,0,0,0.269662616320329,0,0,0,15.426595118379,13.5819423739362,19.1111324801205,0,0,0,0,0,0.686271241194102,0,0,0,0,0.977424915930974,2.07986957055916,0,0.231860809950154,3.87448690978212,0.288732895522148,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0.383382679165211,0,0,0.207328115540772,0.288239906833923,0,0,0,0,0,0.102827492703324,0,0,2.01835951821649,4.3596006883328,1.1734125731352,9.69537868183333,17.8828222925941,4.22651376278,10.9034627799797,9.36066932202295,2.05765899409714,2.83698264046557,3.46348832720929,9.57952557509589,28.7589450857465,5.76268235746538,3.25736184293735,6.39705507736582,0.791951872933429,1.20575750823834,1.74306691720059,1.3996218765488,0,0,0,16.054865317936,32.1613420335519,2.85273810081437,3.04040744001916,3.49309748335652,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,1.10422342547226,2.00068208423871,2.17012018959788,60.7274915669957,37.1132296698096,28.85954195121,13.9398283841329,16.8529815847523,70.4963262573553,6.2083842775503,5.31380478828349,8.84972009000175,4.08352987999989,11.7480694477644,18.8728883095971,0,0,0,0.909382714338778,13.3148351608398,11.1884408531982,40.9377882900982,12.5838818096211,59.2192799253785,58.9440086576224,16.8863392192012,62.2504674825761,25.2310712956485,2.15893571323718,10.2985800681614,3.03870477251094,1.03850885836724,3.1376802184189,0.120859449591622,1.40354529212299,0,10.3333003348146,8.37619372830898,13.7680635707395,0,0,0.784349769176855,0,0.105551628892876,0,0,1.0795795805107,3.08454505380579,1.62567862526312,6.52196706011309,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.206082023295445,1.37354197227515,1.23764249880882,2.29706215198469,0.650060246036521,27.3162680735071,2.61010939388729,1.69453478826109,4.91211759123615,3.30807773962873,4.61907052933577,7.39585138962565,2.21589231281862,16.2928625233529,0.495854746082934,1.15314040419064,0.255225424989168,0.2023155617111,4.18360994367557,24.8701753996206,2.0911118104818,3.69640296211307,1.06461206063404,1.73986598415015,3.89180860118232,2.43312307461385,1.48863347743867,2.84741482246853,12.2003324111248,3.58256907835867,5.56320684444097,3.18203247925937,2.35484592059769,5.03642881233281,13.1777774273306,8.36468056654374,1.41527737101321,6.34041284692033,0.842516912477962,7.80213982543345,1.46228093778771,2.11300293513511,8.46299450729512,26.7256266392517,9.04064932961942,6.61638412255349,2.65375590096488,1.31535265576129,6.36653087693356,7.21484227251296,2.43492452355245,2.478587984798,4.7888252430481,1.57752487424457,3.43871643545924,4.9933947207375,1.41904425628239,6.96655196482292,7.24448764511784,1.89736586882858,3.84928192269481,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.961416640147258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0.568272293612826,0,0,0.307160702099232,0,0,0,0,0,0.398495976502139,1.38141957765574,0,0.102268682502155,0,25.1942066006064,0,0.179021174675609,0,1.08507746200627,0,3.33410970433911,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0.173624994933292,0,0.2411928772508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| ||
|short_description=p21@COL1A1 | |short_description=p21@COL1A1 | ||
}} | }} |
Latest revision as of 00:44, 16 September 2015
Short description: | p21@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 5bp_to_ENST00000476387_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.36e-23 | 76 |
muscle precursor cell | 5.78e-21 | 58 |
myoblast | 5.78e-21 | 58 |
multi-potent skeletal muscle stem cell | 5.78e-21 | 58 |
muscle cell | 4.10e-20 | 55 |
multi fate stem cell | 8.40e-18 | 427 |
somatic stem cell | 8.74e-17 | 433 |
electrically responsive cell | 1.91e-16 | 61 |
electrically active cell | 1.91e-16 | 61 |
stem cell | 1.73e-15 | 441 |
smooth muscle cell | 4.01e-15 | 43 |
smooth muscle myoblast | 4.01e-15 | 43 |
vascular associated smooth muscle cell | 8.92e-10 | 32 |
mesodermal cell | 1.89e-09 | 121 |
preadipocyte | 8.32e-09 | 12 |
stromal cell | 6.56e-08 | 28 |
connective tissue cell | 7.36e-08 | 361 |
extracellular matrix secreting cell | 2.26e-07 | 15 |
cardiocyte | 4.69e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.08e-21 | 62 |
striated muscle tissue | 3.08e-21 | 62 |
myotome | 3.08e-21 | 62 |
muscle tissue | 5.67e-20 | 64 |
musculature | 5.67e-20 | 64 |
musculature of body | 5.67e-20 | 64 |
dense mesenchyme tissue | 1.07e-19 | 73 |
somite | 1.66e-19 | 71 |
presomitic mesoderm | 1.66e-19 | 71 |
presumptive segmental plate | 1.66e-19 | 71 |
dermomyotome | 1.66e-19 | 71 |
trunk paraxial mesoderm | 1.66e-19 | 71 |
epithelial vesicle | 4.21e-19 | 78 |
paraxial mesoderm | 5.87e-19 | 72 |
presumptive paraxial mesoderm | 5.87e-19 | 72 |
trunk mesenchyme | 6.79e-16 | 122 |
multilaminar epithelium | 1.23e-15 | 83 |
mesenchyme | 2.01e-14 | 160 |
entire embryonic mesenchyme | 2.01e-14 | 160 |
splanchnic layer of lateral plate mesoderm | 1.06e-08 | 83 |
unilaminar epithelium | 2.24e-08 | 148 |
mesoderm | 2.79e-08 | 315 |
mesoderm-derived structure | 2.79e-08 | 315 |
presumptive mesoderm | 2.79e-08 | 315 |
connective tissue | 3.82e-08 | 371 |
trunk | 4.11e-08 | 199 |
omentum | 4.82e-07 | 6 |
peritoneum | 4.82e-07 | 6 |
abdominal cavity | 4.82e-07 | 6 |
visceral peritoneum | 4.82e-07 | 6 |
adipose tissue | 4.83e-07 | 14 |