FFCP PHASE1:Hg19::chr11:118754625..118754644,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=643 | |EntrezGene=643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1060 | |HGNC=1060 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=84bp_to_uc001pue.3_5end | |association_with_transcript=84bp_to_uc001pue.3_5end | ||
|cluster_id=chr11:118754625..118754644,+ | |||
|coexpression_cluster_id=C2098 | |||
|description=CAGE_peak_2_at_CXCR5_5end | |description=CAGE_peak_2_at_CXCR5_5end | ||
|id=chr11:118754625..118754644,+ | |id=chr11:118754625..118754644,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.37e-46!140;CL:0002087!9.87e-44!119;CL:0000542!1.96e-40!53;CL:0000051!1.96e-40!53;CL:0000838!6.94e-39!52;CL:0002031!1.82e-34!124;CL:0000037!5.03e-34!172;CL:0000566!5.03e-34!172;CL:0000945!1.10e-31!24;CL:0000826!1.10e-31!24;CL:0000988!5.09e-31!182;CL:0002032!8.40e-31!165;CL:0000837!8.40e-31!165;CL:0000236!1.14e-22!14;CL:0002057!7.72e-13!42;CL:0000860!1.36e-11!45;CL:0000791!4.64e-11!18;CL:0000789!4.64e-11!18;CL:0002420!4.64e-11!18;CL:0002419!4.64e-11!18;CL:0000790!4.64e-11!18;CL:0000624!9.28e-11!6;CL:0000766!4.19e-10!76;CL:0000084!1.34e-08!25;CL:0000827!1.34e-08!25;CL:0000094!1.40e-07!8;CL:0000134!1.95e-07!358;CL:0002194!2.10e-07!63;CL:0000576!2.10e-07!63;CL:0000040!2.10e-07!63;CL:0000559!2.10e-07!63;CL:0002009!5.13e-07!65;CL:0002320!5.60e-07!365 | |ontology_enrichment_celltype=CL:0000738!1.37e-46!140;CL:0002087!9.87e-44!119;CL:0000542!1.96e-40!53;CL:0000051!1.96e-40!53;CL:0000838!6.94e-39!52;CL:0002031!1.82e-34!124;CL:0000037!5.03e-34!172;CL:0000566!5.03e-34!172;CL:0000945!1.10e-31!24;CL:0000826!1.10e-31!24;CL:0000988!5.09e-31!182;CL:0002032!8.40e-31!165;CL:0000837!8.40e-31!165;CL:0000236!1.14e-22!14;CL:0002057!7.72e-13!42;CL:0000860!1.36e-11!45;CL:0000791!4.64e-11!18;CL:0000789!4.64e-11!18;CL:0002420!4.64e-11!18;CL:0002419!4.64e-11!18;CL:0000790!4.64e-11!18;CL:0000624!9.28e-11!6;CL:0000766!4.19e-10!76;CL:0000084!1.34e-08!25;CL:0000827!1.34e-08!25;CL:0000094!1.40e-07!8;CL:0000134!1.95e-07!358;CL:0002194!2.10e-07!63;CL:0000576!2.10e-07!63;CL:0000040!2.10e-07!63;CL:0000559!2.10e-07!63;CL:0002009!5.13e-07!65;CL:0002320!5.60e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.79e-45;24!CL:0000236;1.31e-38;13!CL:0000542;2.71e-26;53!CL:0000624;1.95e-13;6!CL:0000226;5.59e-11;3!CL:0000842;5.59e-11;3!CL:0000767;6.61e-10;3!CL:0000094;1.61e-09;8!CL:0002087;2.55e-09;104!CL:0000738;3.95e-07;136!CL:0000081;7.54e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.68e-45,24;CL:0000826,7.68e-45,24;CL:0000542,4.12e-38,53;CL:0000051,4.12e-38,53;CL:0000838,8.15e-36,52;CL:0000236,1.24e-35,14;CL:0000738,1.24e-31,136;CL:0002087,1.65e-27,115;CL:0000037,1.01e-23,168;CL:0000988,5.15e-22,177;CL:0002032,1.96e-19,161;CL:0000837,1.96e-19,161;CL:0002031,2.35e-19,120;CL:0000624,2.06e-13,6;CL:0000226,5.50e-11,3;CL:0000842,5.50e-11,3;CL:0000767,6.11e-10,3;CL:0000094,1.66e-09,8;CL:0000081,7.70e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;2.71e-26;53!UBERON:0004872;5.24e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.37e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.62e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.09e-16!102;UBERON:0003061!3.09e-16!102;UBERON:0002193!5.95e-16!112;UBERON:0000178!1.06e-12!15;UBERON:0000179!1.06e-12!15;UBERON:0000463!1.06e-12!15;UBERON:0004177!9.31e-09!7;UBERON:0002384!9.80e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.95e-13;15!UBERON:0000179;6.95e-13;15!UBERON:0000463;6.95e-13;15!UBERON:0002390;7.19e-12;32!UBERON:0002106;7.32e-11;3!UBERON:0002193;3.70e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.14e-13,15;UBERON:0000179,6.14e-13,15;UBERON:0000463,6.14e-13,15;UBERON:0002106,9.75e-11,3;UBERON:0004854,9.75e-11,3;UBERON:0009034,9.75e-11,3;UBERON:0002095,9.75e-11,3;UBERON:0004782,9.75e-11,3;UBERON:0003281,9.75e-11,3;UBERON:0009664,9.75e-11,3;UBERON:0002296,9.75e-11,3;UBERON:0005602,9.75e-11,3;UBERON:0001179,9.75e-11,3;UBERON:0006293,9.75e-11,3;UBERON:0002193,4.58e-08,108;UBERON:0004177,1.15e-07,7;UBERON:0005057,1.15e-07,7;UBERON:0002390,2.89e-07,98;UBERON:0003061,2.89e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,1.57345710739562,1.91914699048606,1.23852898652861,0,0,0,17.97239053463,7.2506308568585,0,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0.822335776043652,0,0,0.512321413058201,0.236482229888585,0,0.645484683583826,0,0.188242339542605,1.09162460023138,0.224723484445085,0,2.56743221660875,0,0.329851300186716,0.997318288108159,0.426224750532694,0,0.56738522469114,1.24564449799115,0.75374599577023,2.08593167368081,0.217188844705117,0.605399502633369,2.20966581592539,0.632924774881769,0,0,0,0,0,0,0,0,0,15.839662001519,30.0376236194172,21.3482220927253,18.3493995703598,24.0237592221607,24.1396024780883,26.4417949113945,24.8053976179195,98.4738436559346,182.043528704991,181.962056587609,9.25199300053181,18.4967825783907,0,1.7703879310245,3.53709686474248,4.72883447698871,0,3.58514493296949,1.4203434172042,1.94826728407911,0,0.589211814949674,0.221533894583621,0.541607727530031,0,0,0,0,0,0,0,0,0,1.14966148080576,0.68725489096526,2.53019692019503,0.318565414324097,0,1.90090408889675,0.150575119077773,0.127986611154418,0,0,0,0.80642697289893,0,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0,1.90792499444274,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.431255149719035,0.513372145118994,0,0,0,0,0,1.49801404789436,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44364894042395,4.31428401637234,6.72383614161699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.70894156152249,2.85878130549347,4.11362273086194,0.648473311192717,3.7802200606668,1.58625035258854,0,0,0,5.38829207864584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,10.2225048746525,0,0,18.3396360136994,0,0,0,0,0.986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,2.4441205797345,0,0,0,0,0,0,15.3262022941159,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,7.44249032717926,0,206.438454255619,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,5.33866436948529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.308696632431779,0,0,0,0,0,0,0,0,12.4058771733407,10.3132620757723,1.09935271517422,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0.258355639344024,0.558672428662721,0,0,0,0,0,10.6416243763048,0.286888821570705,0,0,0,0,0,0,0,0,0,7.44713036286797,3.20568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,1.57345710739562,1.91914699048606,1.23852898652861,0,0,0,17.97239053463,7.2506308568585,0,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0.822335776043652,0,0,0.512321413058201,0.236482229888585,0,0.645484683583826,0,0.188242339542605,1.09162460023138,0.224723484445085,0,2.56743221660875,0,0.329851300186716,0.997318288108159,0.426224750532694,0,0.56738522469114,1.24564449799115,0.75374599577023,2.08593167368081,0.217188844705117,0.605399502633369,2.20966581592539,0.632924774881769,0,0,0,0,0,0,0,0,0,15.839662001519,30.0376236194172,21.3482220927253,18.3493995703598,24.0237592221607,24.1396024780883,26.4417949113945,24.8053976179195,98.4738436559346,182.043528704991,181.962056587609,9.25199300053181,18.4967825783907,0,1.7703879310245,3.53709686474248,4.72883447698871,0,3.58514493296949,1.4203434172042,1.94826728407911,0,0.589211814949674,0.221533894583621,0.541607727530031,0,0,0,0,0,0,0,0,0,1.14966148080576,0.68725489096526,2.53019692019503,0.318565414324097,0,1.90090408889675,0.150575119077773,0.127986611154418,0,0,0,0.80642697289893,0,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0,1.90792499444274,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.431255149719035,0.513372145118994,0,0,0,0,0,1.49801404789436,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44364894042395,4.31428401637234,6.72383614161699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.70894156152249,2.85878130549347,4.11362273086194,0.648473311192717,3.7802200606668,1.58625035258854,0,0,0,5.38829207864584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,10.2225048746525,0,0,18.3396360136994,0,0,0,0,0.986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,2.4441205797345,0,0,0,0,0,0,15.3262022941159,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,7.44249032717926,0,206.438454255619,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,5.33866436948529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.308696632431779,0,0,0,0,0,0,0,0,12.4058771733407,10.3132620757723,1.09935271517422,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0.258355639344024,0.558672428662721,0,0,0,0,0,10.6416243763048,0.286888821570705,0,0,0,0,0,0,0,0,0,7.44713036286797,3.20568492303233 | ||
|short_description=p2@CXCR5 | |short_description=p2@CXCR5 | ||
}} | }} |
Latest revision as of 01:31, 16 September 2015
Short description: | p2@CXCR5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CXCR5_5end |
Coexpression cluster: | C2098_lymphoma_CD19_b_CD34_Burkitt_diffuse_spleen |
Association with transcript: | 84bp_to_uc001pue.3_5end |
EntrezGene: | CXCR5 |
HGNC: | 1060 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.68e-45 | 24 |
pro-B cell | 7.68e-45 | 24 |
lymphocyte | 4.12e-38 | 53 |
common lymphoid progenitor | 4.12e-38 | 53 |
lymphoid lineage restricted progenitor cell | 8.15e-36 | 52 |
B cell | 1.24e-35 | 14 |
leukocyte | 1.24e-31 | 136 |
nongranular leukocyte | 1.65e-27 | 115 |
hematopoietic stem cell | 1.01e-23 | 168 |
hematopoietic cell | 5.15e-22 | 177 |
hematopoietic oligopotent progenitor cell | 1.96e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.96e-19 | 161 |
hematopoietic lineage restricted progenitor cell | 2.35e-19 | 120 |
CD4-positive, alpha-beta T cell | 2.06e-13 | 6 |
single nucleate cell | 5.50e-11 | 3 |
mononuclear cell | 5.50e-11 | 3 |
basophil | 6.11e-10 | 3 |
granulocyte | 1.66e-09 | 8 |
blood cell | 7.70e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 6.14e-13 | 15 |
haemolymphatic fluid | 6.14e-13 | 15 |
organism substance | 6.14e-13 | 15 |
spleen | 9.75e-11 | 3 |
gastrointestinal system mesentery | 9.75e-11 | 3 |
stomach region | 9.75e-11 | 3 |
mesentery | 9.75e-11 | 3 |
gastrointestinal system serosa | 9.75e-11 | 3 |
mesentery of stomach | 9.75e-11 | 3 |
gut mesentery | 9.75e-11 | 3 |
dorsal mesentery | 9.75e-11 | 3 |
dorsal mesogastrium | 9.75e-11 | 3 |
peritoneal cavity | 9.75e-11 | 3 |
spleen primordium | 9.75e-11 | 3 |
hemolymphoid system | 4.58e-08 | 108 |
hemopoietic organ | 1.15e-07 | 7 |
immune organ | 1.15e-07 | 7 |
hematopoietic system | 2.89e-07 | 98 |
blood island | 2.89e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.62e-08 | 10 |