FFCP PHASE1:Hg19::chr2:238268028..238268038,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=P12111 | |UniProt=P12111 | ||
|association_with_transcript=0bp_to_M27449,X06196_5end | |association_with_transcript=0bp_to_M27449,X06196_5end | ||
|cluster_id=chr2:238268028..238268038,- | |||
|coexpression_cluster_id=C332 | |coexpression_cluster_id=C332 | ||
|description=CAGE_peak_25_at_COL6A3_5end | |description=CAGE_peak_25_at_COL6A3_5end | ||
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|ontology_enrichment_celltype=CL:0000057!5.35e-21!75;CL:0000055!6.90e-20!180;CL:0002620!1.48e-17!23;CL:0000048!5.51e-08!430;CL:0000723!1.74e-07!436;CL:0000034!7.51e-07!444 | |ontology_enrichment_celltype=CL:0000057!5.35e-21!75;CL:0000055!6.90e-20!180;CL:0002620!1.48e-17!23;CL:0000048!5.51e-08!430;CL:0000723!1.74e-07!436;CL:0000034!7.51e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.76e-14;3!CL:0000388;1.76e-14;3!CL:0002575;3.16e-10;2!CL:0002559;6.98e-09;5!CL:0000723;8.57e-08;61!CL:0002092;1.07e-07;10!CL:0002540;1.19e-07;6!CL:0000134;1.77e-07;55!CL:0000346;4.32e-07;3!CL:1000428;4.32e-07;3!CL:0000048;4.46e-07;58!CL:0002620;4.97e-07;23 | |ontology_enrichment_celltype_v019=CL:0000135;1.76e-14;3!CL:0000388;1.76e-14;3!CL:0002575;3.16e-10;2!CL:0002559;6.98e-09;5!CL:0000723;8.57e-08;61!CL:0002092;1.07e-07;10!CL:0002540;1.19e-07;6!CL:0000134;1.77e-07;55!CL:0000346;4.32e-07;3!CL:1000428;4.32e-07;3!CL:0000048;4.46e-07;58!CL:0002620;4.97e-07;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000135,2.15e-14,3;CL:0000388,2.15e-14,3;CL:0002575,2.76e-10,2;CL:0002559,4.03e-09,5;CL:0002540,8.05e-08,6;CL:0002092,9.16e-08,10;CL:0000346,2.25e-07,3;CL:1000428,2.25e-07,3;CL:0002620,4.28e-07,23 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!8.96e-07!5;DOID:450!8.96e-07!5;DOID:66!8.96e-07!5;DOID:423!8.96e-07!5;DOID:0080000!8.96e-07!5;DOID:11722!8.96e-07!5 | |ontology_enrichment_disease=DOID:17!8.96e-07!5;DOID:450!8.96e-07!5;DOID:66!8.96e-07!5;DOID:423!8.96e-07!5;DOID:0080000!8.96e-07!5;DOID:11722!8.96e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:17;1.63e-09;5!DOID:450;1.63e-09;5!DOID:66;1.63e-09;5!DOID:423;1.63e-09;5!DOID:0080000;1.63e-09;5!DOID:11722;1.63e-09;5 | |ontology_enrichment_disease_v019=DOID:17;1.63e-09;5!DOID:450;1.63e-09;5!DOID:66;1.63e-09;5!DOID:423;1.63e-09;5!DOID:0080000;1.63e-09;5!DOID:11722;1.63e-09;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,1.50e-09,5;DOID:450,1.50e-09,5;DOID:66,1.50e-09,5;DOID:423,1.50e-09,5;DOID:0080000,1.50e-09,5;DOID:11722,1.50e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.50e-14!45;UBERON:0002416!2.50e-14!45;UBERON:0003102!6.47e-14!95;UBERON:0002097!5.20e-13!40;UBERON:0000914!3.12e-11!83;UBERON:0002329!3.12e-11!83;UBERON:0003077!3.12e-11!83;UBERON:0003059!3.12e-11!83;UBERON:0007282!3.12e-11!83;UBERON:0009618!3.12e-11!83;UBERON:0007285!3.12e-11!83;UBERON:0005256!2.88e-08!143;UBERON:0004290!1.76e-07!70;UBERON:0002384!7.08e-07!375 | |ontology_enrichment_uberon=UBERON:0002199!2.50e-14!45;UBERON:0002416!2.50e-14!45;UBERON:0003102!6.47e-14!95;UBERON:0002097!5.20e-13!40;UBERON:0000914!3.12e-11!83;UBERON:0002329!3.12e-11!83;UBERON:0003077!3.12e-11!83;UBERON:0003059!3.12e-11!83;UBERON:0007282!3.12e-11!83;UBERON:0009618!3.12e-11!83;UBERON:0007285!3.12e-11!83;UBERON:0005256!2.88e-08!143;UBERON:0004290!1.76e-07!70;UBERON:0002384!7.08e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.76e-14;3!UBERON:0000043;1.76e-14;3!UBERON:0007845;1.76e-14;3!UBERON:0002081;3.16e-10;2!UBERON:0002073;6.98e-09;5!UBERON:0002199;1.72e-08;46!UBERON:0002416;1.72e-08;46!UBERON:0002097;5.88e-08;41!UBERON:0004151;4.32e-07;3!UBERON:0000412;4.32e-07;3!UBERON:0001992;4.32e-07;3!UBERON:0003102;4.75e-07;50 | |ontology_enrichment_uberon_v019=UBERON:0007846;1.76e-14;3!UBERON:0000043;1.76e-14;3!UBERON:0007845;1.76e-14;3!UBERON:0002081;3.16e-10;2!UBERON:0002073;6.98e-09;5!UBERON:0002199;1.72e-08;46!UBERON:0002416;1.72e-08;46!UBERON:0002097;5.88e-08;41!UBERON:0004151;4.32e-07;3!UBERON:0000412;4.32e-07;3!UBERON:0001992;4.32e-07;3!UBERON:0003102;4.75e-07;50 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.15e-14,3;UBERON:0000043,2.15e-14,3;UBERON:0007845,2.15e-14,3;UBERON:0002199,1.73e-10,46;UBERON:0002416,1.73e-10,46;UBERON:0002081,4.02e-10,2;UBERON:0010227,4.02e-10,2;UBERON:0002097,5.92e-10,41;UBERON:0002073,4.03e-09,5;UBERON:0005086,4.03e-09,5;UBERON:0000412,2.25e-07,3;UBERON:0001992,2.25e-07,3;UBERON:0004151,5.06e-07,3 | |||
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| ||
|short_description=p25@COL6A3 | |short_description=p25@COL6A3 | ||
}} | }} |
Latest revision as of 03:25, 16 September 2015
Short description: | p25@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 0bp_to_M27449, X06196_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | P12111 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 2.15e-14 | 3 |
tendon cell | 2.15e-14 | 3 |
central nervous system pericyte | 2.76e-10 | 2 |
hair follicle cell | 4.03e-09 | 5 |
mesenchymal stem cell of the bone marrow | 8.05e-08 | 6 |
bone marrow cell | 9.16e-08 | 10 |
hair follicle dermal papilla cell | 2.25e-07 | 3 |
stem cell of epidermis | 2.25e-07 | 3 |
skin fibroblast | 4.28e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 2.15e-14 | 3 |
tendon | 2.15e-14 | 3 |
regular connective tissue | 2.15e-14 | 3 |
integument | 1.73e-10 | 46 |
integumental system | 1.73e-10 | 46 |
cardiac atrium | 4.02e-10 | 2 |
future cardiac atrium | 4.02e-10 | 2 |
skin of body | 5.92e-10 | 41 |
hair follicle | 4.03e-09 | 5 |
hair follicle placode | 4.03e-09 | 5 |
dermal papilla | 2.25e-07 | 3 |
papillary layer of dermis | 2.25e-07 | 3 |
cardiac chamber | 5.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.50e-09 | 5 |
myotonic disease | 1.50e-09 | 5 |
muscle tissue disease | 1.50e-09 | 5 |
myopathy | 1.50e-09 | 5 |
muscular disease | 1.50e-09 | 5 |
myotonic dystrophy | 1.50e-09 | 5 |