FFCP PHASE1:Hg19::chr2:238270402..238270421,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=P12111 | |UniProt=P12111 | ||
|association_with_transcript=4bp_to_M20778_5end | |association_with_transcript=4bp_to_M20778_5end | ||
|cluster_id=chr2:238270402..238270421,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_7_at_COL6A3_5end | |description=CAGE_peak_7_at_COL6A3_5end | ||
|id=chr2:238270402..238270421,- | |id=chr2:238270402..238270421,- | ||
|ontology_enrichment_celltype=CL:0000055!2.33e-31!180;CL:0000057!1.20e-30!75;CL:0002620!1.34e-13!23;CL:0000048!1.36e-12!430;CL:0000723!9.63e-12!436;CL:0000034!5.63e-11!444;CL:0002320!1.19e-09!365;CL:0002570!5.27e-08!8;CL:0000499!5.85e-08!27;CL:0000134!9.20e-08!358;CL:0000680!7.43e-07!57;CL:0000056!7.43e-07!57;CL:0000355!7.43e-07!57;CL:0000219!9.31e-07!390;CL:0000183!9.61e-07!59 | |ontology_enrichment_celltype=CL:0000055!2.33e-31!180;CL:0000057!1.20e-30!75;CL:0002620!1.34e-13!23;CL:0000048!1.36e-12!430;CL:0000723!9.63e-12!436;CL:0000034!5.63e-11!444;CL:0002320!1.19e-09!365;CL:0002570!5.27e-08!8;CL:0000499!5.85e-08!27;CL:0000134!9.20e-08!358;CL:0000680!7.43e-07!57;CL:0000056!7.43e-07!57;CL:0000355!7.43e-07!57;CL:0000219!9.31e-07!390;CL:0000183!9.61e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000723;9.55e-13;61!CL:0000134;1.21e-12;55!CL:0002570;3.07e-11;8!CL:0000048;8.21e-11;58!CL:0000057;1.87e-10;73!CL:0002620;1.90e-09;23!CL:0000034;2.35e-09;69!CL:0000499;9.65e-09;28!CL:0002320;2.00e-08;188!CL:0002540;4.65e-08;6!CL:0002552;1.40e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.65e-24,76;CL:0002320,5.89e-17,361;CL:0000048,6.03e-17,427;CL:0000723,3.00e-16,433;CL:0000034,2.37e-15,441;CL:0000134,9.97e-14,354;CL:0002570,1.99e-11,8;CL:0000219,4.48e-11,386;CL:0002620,2.19e-09,23;CL:0000499,6.75e-09,28;CL:0002540,7.02e-08,6;CL:0002552,1.09e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.23e-07;5!DOID:450;1.23e-07;5!DOID:66;1.23e-07;5!DOID:423;1.23e-07;5!DOID:0080000;1.23e-07;5!DOID:11722;1.23e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.79e-07,5;DOID:450,1.79e-07,5;DOID:66,1.79e-07,5;DOID:423,1.79e-07,5;DOID:0080000,1.79e-07,5;DOID:11722,1.79e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!2.36e-16!95;UBERON:0002199!1.96e-12!45;UBERON:0002416!1.96e-12!45;UBERON:0000914!3.71e-11!83;UBERON:0002329!3.71e-11!83;UBERON:0003077!3.71e-11!83;UBERON:0003059!3.71e-11!83;UBERON:0007282!3.71e-11!83;UBERON:0009618!3.71e-11!83;UBERON:0007285!3.71e-11!83;UBERON:0002384!2.17e-10!375;UBERON:0002097!1.60e-09!40;UBERON:0004290!3.09e-09!70;UBERON:0005256!2.12e-08!143;UBERON:0001013!4.94e-08!14;UBERON:0002385!2.23e-07!63;UBERON:0001015!2.23e-07!63;UBERON:0000383!2.23e-07!63;UBERON:0000486!4.45e-07!82;UBERON:0001134!6.90e-07!61;UBERON:0002036!6.90e-07!61;UBERON:0003082!6.90e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;9.83e-11;198!UBERON:0001013;1.63e-10;14!UBERON:0002199;7.11e-08;46!UBERON:0002416;7.11e-08;46!UBERON:0003102;4.66e-07;50!UBERON:0002072;7.11e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.06e-17,371;UBERON:0003102,3.69e-14,99;UBERON:0002199,2.21e-11,46;UBERON:0002416,2.21e-11,46;UBERON:0001013,9.34e-11,14;UBERON:0002097,9.08e-08,41;UBERON:0002072,5.21e-07,5 | |||
|phase1_expression=1.2717486548939,2.78330681058278,0.281908808191942,3.00219895059391,0.893922188854576,0,2.53299878168311,2.52687949370732,2.87304191019822,0.245733936501509,0,0.218441372130172,0.263766978228454,2.22779435328084,1.98838425436749,0,0.602694528023977,0.730310090387373,2.92759679274304,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0,1.0843174571537,2.00535164254356,3.18662341713812,3.9764297352555,3.40644409211845,0,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,2.02608818663328,0.529636723252875,8.60509862246441,3.90135220418193,0,1.06748995729705,1.97334038733728,0.311211035399766,0.942974704487816,0.163461903113459,2.4217188423189,5.18558332031999,0.234321431833797,0.624320153660641,0.570471821544449,2.69007624993242,0.469737994575059,0.809364721840658,1.12360645361799,2.85815839756851,2.45668634623536,6.09622108937016,4.75201142912821,3.4617370098998,0.910161361938026,0,1.34668891163253,2.62748891731125,0.277064115484183,0.438977620880838,1.22595118319608,1.80285670687916,0.567160915800105,5.56107870635472,3.84403299873421,3.17897851739343,3.00091096084402,2.06105058476878,1.8034837803194,1.48893485065272,6.24472429292685,1.36411807225678,1.51460264546469,2.30124746605748,0.969876340912871,3.19508633264953,0.906768884048762,2.03472710772585,0,0,0,0,0,0.348581828608555,0,0,0,0,7.71889125831462,1.38134921352481,3.71494342425583,2.16563844500876,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,4.41026134156626,0,0,0,0,0,0.343135620597051,0,0,0,0,2.28065813717227,2.07986957055916,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.784917590417525,1.74384027533312,0.8800594298514,0.517086863031111,3.57656445851882,5.917119267892,0.797814349754612,1.04007436911366,1.02882949704857,2.83698264046557,1.0656887160644,2.28764789853036,3.7983512377401,2.46972101034231,2.93162565864362,1.06617584622764,0,0,0,0,0,0,0,1.19812427745791,3.44585807502342,0,0.579125226670317,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,3.18997878469764,1.00034104211935,1.35632511849868,2.49565033836969,3.03329280955175,1.26161932027148,1.7571212248907,0.601892199455438,0,1.03473071292505,2.65690239414175,1.47495334833363,1.99832313276591,1.56640925970192,5.49029478097369,0,0,0,0,0,0,0.248107807818777,0.61384789315225,3.64858122762996,0.256278298511402,0,1.76939313257968,0,3.08419387605311,2.66342587969691,1.14978018419333,4.67328986265259,1.74315567689939,0,0,0,2.64073230778596,9.10455840033585,6.94959399284948,0,0,0,0,0,0,0,0.215915916102139,0,0.812839312631559,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0.650060246036521,0,1.64340221096607,0.924291702687866,1.07452572308291,0.551346289938122,3.86712881525785,4.64053420525531,2.47157219506693,3.20515328328254,0,0,0,0,0,4.7221852024596,0.6970372701606,0,0,0.869932992075073,0,0,0.372158369359667,0,0,1.02359116524534,9.84259672478017,0,0,1.07923474549989,0.54907405947211,1.17812402345686,0,0,0,0,0.974853958525138,0,1.36499911407986,7.35308246159306,2.26016233240486,1.10273068709225,0,0,1.15755106853338,2.62357900818653,0.202910376962704,0.92947049429925,0.845086807596724,0.430234056612155,0.589494246078727,0,0,1.68886108238131,0.658589785919804,1.13841952129715,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.796991953004279,0.552567831062295,0,0,0,3.11039587661807,0,0,0,0.789147245095469,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.538651809526579,0,0,0,0,0.31900115973192,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0.505492637027904,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0.698906672968121,2.40780445460263,0,0,0,0,0,0.677942222341597,1.50746117111426,0,0,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,1.63197148218115,1.44475294950759,0,0,0,0,0,1.11712960508902,0.687481272035051,0,0.599037001496973,0.858452096273142,0.446342914883745,0.470284307407084,2.88239906833923,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0.236417121897595,0.209818352539992,0,0,0,0,0.662091970365432,0,0.542999601753713,0,6.20515984207877,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0.992332043623902,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,1.6468607378872,0,0,2.98509605773748,5.84283274618061,2.21922344601045,3.78806010550178,6.28919754381438,6.22867855117575,1.14420034198462,3.02461847526478,2.17612080815893,1.77426179987561,1.75226443880073,0.89960622432720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| ||
|short_description=p7@COL6A3 | |short_description=p7@COL6A3 | ||
}} | }} |
Latest revision as of 03:26, 16 September 2015
Short description: | p7@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 4bp_to_M20778_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | P12111 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.65e-24 | 76 |
connective tissue cell | 5.89e-17 | 361 |
multi fate stem cell | 6.03e-17 | 427 |
somatic stem cell | 3.00e-16 | 433 |
stem cell | 2.37e-15 | 441 |
mesenchymal cell | 9.97e-14 | 354 |
mesenchymal stem cell of adipose | 1.99e-11 | 8 |
motile cell | 4.48e-11 | 386 |
skin fibroblast | 2.19e-09 | 23 |
stromal cell | 6.75e-09 | 28 |
mesenchymal stem cell of the bone marrow | 7.02e-08 | 6 |
fibroblast of gingiva | 1.09e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.06e-17 | 371 |
surface structure | 3.69e-14 | 99 |
integument | 2.21e-11 | 46 |
integumental system | 2.21e-11 | 46 |
adipose tissue | 9.34e-11 | 14 |
skin of body | 9.08e-08 | 41 |
hypodermis | 5.21e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.79e-07 | 5 |
myotonic disease | 1.79e-07 | 5 |
muscle tissue disease | 1.79e-07 | 5 |
myopathy | 1.79e-07 | 5 |
muscular disease | 1.79e-07 | 5 |
myotonic dystrophy | 1.79e-07 | 5 |