FFCP PHASE1:Hg19::chr5:149829314..149829325,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6208 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10387 | |||
|TSSclassifier=strong | |||
|UniProt=P62263 | |||
|association_with_transcript=0bp_to_ENST00000407193,NM_001025070,NM_001025071,NM_005617,uc003lsh.2,uc003lsi.2,uc003lsj.2_5end | |||
|cluster_id=chr5:149829314..149829325,- | |||
|description=CAGE_peak_3_at_RPS14_5end | |||
|id=chr5:149829314..149829325,- | |||
|ontology_enrichment_celltype=CL:0000548!2.66e-17!679;CL:0000004!2.66e-17!679;CL:0000255!2.66e-17!679;CL:0000012!2.95e-17!682;CL:0000066!4.33e-11!254;CL:0000003!5.60e-10!722;CL:0002321!1.11e-09!248;CL:0000183!2.84e-09!59;CL:0000220!3.44e-09!246;CL:0000393!4.99e-09!60;CL:0000211!4.99e-09!60;CL:0000144!6.50e-09!625;CL:0000192!1.57e-08!42;CL:0000514!1.57e-08!42;CL:0000680!3.16e-08!57;CL:0000056!3.16e-08!57;CL:0000355!3.16e-08!57;CL:0000187!3.46e-08!54;CL:0000055!3.45e-07!180;CL:0000359!3.62e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.91e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.26e-11,253;CL:0002321,8.98e-10,250;CL:0000393,7.93e-09,61;CL:0000211,7.93e-09,61;CL:0000192,3.28e-08,43;CL:0000514,3.28e-08,43;CL:0000680,4.92e-08,58;CL:0000056,4.92e-08,58;CL:0000355,4.92e-08,58;CL:0000187,5.48e-08,55;CL:0000359,3.60e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.31e-14!239;DOID:162!3.28e-13!235;DOID:2531!3.67e-08!51;DOID:0060083!3.67e-08!51;DOID:0050686!1.67e-07!137;DOID:1240!8.78e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,6.84e-14,239;DOID:162,3.07e-13,235;DOID:2531,3.65e-08,51;DOID:0060083,3.65e-08,51;DOID:0050686,1.58e-07,137;DOID:1240,8.75e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000486!2.10e-10!82;UBERON:0003104!3.10e-10!238;UBERON:0009142!3.10e-10!238;UBERON:0004290!6.57e-10!70;UBERON:0000914!1.17e-08!83;UBERON:0002329!1.17e-08!83;UBERON:0003077!1.17e-08!83;UBERON:0003059!1.17e-08!83;UBERON:0007282!1.17e-08!83;UBERON:0009618!1.17e-08!83;UBERON:0007285!1.17e-08!83;UBERON:0002100!1.33e-08!216;UBERON:0001134!1.18e-07!61;UBERON:0002036!1.18e-07!61;UBERON:0003082!1.18e-07!61;UBERON:0005256!1.18e-07!143;UBERON:0002385!5.27e-07!63;UBERON:0001015!5.27e-07!63;UBERON:0000383!5.27e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.63e-11,78;UBERON:0000486,3.28e-10,83;UBERON:0002329,1.07e-09,71;UBERON:0003059,1.07e-09,71;UBERON:0007282,1.07e-09,71;UBERON:0004290,1.07e-09,71;UBERON:0009618,1.07e-09,71;UBERON:0002100,2.11e-09,199;UBERON:0003077,3.09e-09,72;UBERON:0007285,3.09e-09,72;UBERON:0007524,4.96e-09,73;UBERON:0001134,1.80e-07,62;UBERON:0002036,1.80e-07,62;UBERON:0003082,1.80e-07,62;UBERON:0005256,2.20e-07,122;UBERON:0003104,7.32e-07,160;UBERON:0009142,7.32e-07,160;UBERON:0002385,7.75e-07,64;UBERON:0001015,7.75e-07,64;UBERON:0000383,7.75e-07,64;UBERON:0000490,9.54e-07,148 | |||
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| |||
|short_description=p3@RPS14 | |||
}} |
Latest revision as of 04:53, 16 September 2015
Short description: | p3@RPS14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RPS14_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000407193, NM_001025070, NM_001025071, NM_005617, uc003lsh.2, uc003lsi.2, uc003lsj.2_5end |
EntrezGene: | RPS14 |
HGNC: | 10387 |
UniProt: | P62263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.26e-11 | 253 |
embryonic cell | 8.98e-10 | 250 |
electrically responsive cell | 7.93e-09 | 61 |
electrically active cell | 7.93e-09 | 61 |
smooth muscle cell | 3.28e-08 | 43 |
smooth muscle myoblast | 3.28e-08 | 43 |
muscle precursor cell | 4.92e-08 | 58 |
myoblast | 4.92e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.92e-08 | 58 |
muscle cell | 5.48e-08 | 55 |
vascular associated smooth muscle cell | 3.60e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.63e-11 | 78 |
multilaminar epithelium | 3.28e-10 | 83 |
somite | 1.07e-09 | 71 |
presomitic mesoderm | 1.07e-09 | 71 |
presumptive segmental plate | 1.07e-09 | 71 |
dermomyotome | 1.07e-09 | 71 |
trunk paraxial mesoderm | 1.07e-09 | 71 |
trunk | 2.11e-09 | 199 |
paraxial mesoderm | 3.09e-09 | 72 |
presumptive paraxial mesoderm | 3.09e-09 | 72 |
dense mesenchyme tissue | 4.96e-09 | 73 |
skeletal muscle tissue | 1.80e-07 | 62 |
striated muscle tissue | 1.80e-07 | 62 |
myotome | 1.80e-07 | 62 |
trunk mesenchyme | 2.20e-07 | 122 |
mesenchyme | 7.32e-07 | 160 |
entire embryonic mesenchyme | 7.32e-07 | 160 |
muscle tissue | 7.75e-07 | 64 |
musculature | 7.75e-07 | 64 |
musculature of body | 7.75e-07 | 64 |
unilaminar epithelium | 9.54e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 6.84e-14 | 239 |
cancer | 3.07e-13 | 235 |
hematologic cancer | 3.65e-08 | 51 |
immune system cancer | 3.65e-08 | 51 |
organ system cancer | 1.58e-07 | 137 |
leukemia | 8.75e-07 | 39 |