FFCP PHASE1:Hg19::chr9:136006496..136006558,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:136006496..136006558,-
|short_description=p6@RALGDS
|description=CAGE_peak_6_at_RALGDS_5end
|association_with_transcript=0bp_to_ENST00000372062,uc011mcv.1_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5900 | |EntrezGene=5900 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9842 | |HGNC=9842 | ||
|TSSclassifier=strong | |||
|UniProt=E7ER93 | |UniProt=E7ER93 | ||
|association_with_transcript=0bp_to_ENST00000372062,uc011mcv.1_5end | |||
|cluster_id=chr9:136006496..136006558,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_6_at_RALGDS_5end | |||
|id=chr9:136006496..136006558,- | |||
|ontology_enrichment_celltype=CL:0000838!2.06e-39!52;CL:0000542!2.43e-38!53;CL:0000051!2.43e-38!53;CL:0000738!2.08e-36!140;CL:0000084!2.97e-30!25;CL:0000827!2.97e-30!25;CL:0000037!2.86e-28!172;CL:0000566!2.86e-28!172;CL:0000988!3.91e-28!182;CL:0002087!1.24e-26!119;CL:0002031!2.27e-25!124;CL:0002032!2.42e-24!165;CL:0000837!2.42e-24!165;CL:0000791!1.63e-23!18;CL:0000789!1.63e-23!18;CL:0002420!1.63e-23!18;CL:0002419!1.63e-23!18;CL:0000790!1.63e-23!18;CL:0000625!2.57e-15!11;CL:0000945!2.44e-09!24;CL:0000826!2.44e-09!24;CL:0000624!1.34e-08!6;CL:0000080!1.25e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.45e-41;25!CL:0000791;6.25e-40;18!CL:0000789;6.25e-40;18!CL:0002419;6.25e-40;18!CL:0000625;1.34e-25;11!CL:0000542;6.45e-24;53!CL:0000624;8.58e-14;6!CL:0000623;1.46e-08;3!CL:0002087;2.36e-08;104!CL:0000898;1.29e-07;3!CL:0000226;2.04e-07;3!CL:0000842;2.04e-07;3!CL:0000767;4.13e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.26e-44,52;CL:0000542,1.41e-43,53;CL:0000051,1.41e-43,53;CL:0000084,1.30e-41,25;CL:0000827,1.30e-41,25;CL:0000791,5.29e-40,18;CL:0000789,5.29e-40,18;CL:0002420,5.29e-40,18;CL:0002419,5.29e-40,18;CL:0000790,5.29e-40,18;CL:0000738,8.83e-30,136;CL:0000625,1.31e-25,11;CL:0002087,4.52e-24,115;CL:0000988,6.87e-24,177;CL:0000037,1.43e-22,168;CL:0002031,4.80e-21,120;CL:0002032,1.57e-18,161;CL:0000837,1.57e-18,161;CL:0000624,7.43e-14,6;CL:0000623,1.46e-08,3;CL:0000825,1.46e-08,3;CL:0000898,1.18e-07,3;CL:0000226,1.97e-07,3;CL:0000842,1.97e-07,3;CL:0000767,3.79e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;6.25e-40;18!CL:0000051;6.45e-24;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.21e-17!15;UBERON:0000179!1.21e-17!15;UBERON:0000463!1.21e-17!15;UBERON:0007023!2.97e-13!115;UBERON:0002390!5.12e-10!102;UBERON:0003061!5.12e-10!102;UBERON:0002193!2.11e-09!112;UBERON:0004177!3.78e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-29;15!UBERON:0000179;1.24e-29;15!UBERON:0000463;1.24e-29;15!UBERON:0002390;5.44e-18;32!UBERON:0002193;3.96e-11;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.09e-29,15;UBERON:0000179,1.09e-29,15;UBERON:0000463,1.09e-29,15;UBERON:0004177,1.78e-10,7;UBERON:0005057,1.78e-10,7;UBERON:0002193,1.98e-09,108;UBERON:0002390,2.61e-09,98;UBERON:0003061,2.61e-09,98;UBERON:0002370,3.55e-09,4;UBERON:0005058,3.55e-09,4;UBERON:0009113,3.55e-09,4;UBERON:0003295,3.55e-09,4;UBERON:0005562,3.55e-09,4 | |||
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| ||
|short_description=p6@RALGDS | |||
}} | }} |
Latest revision as of 06:12, 16 September 2015
Short description: | p6@RALGDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RALGDS_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000372062, uc011mcv.1_5end |
EntrezGene: | RALGDS |
HGNC: | 9842 |
UniProt: | E7ER93 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.26e-44 | 52 |
lymphocyte | 1.41e-43 | 53 |
common lymphoid progenitor | 1.41e-43 | 53 |
T cell | 1.30e-41 | 25 |
pro-T cell | 1.30e-41 | 25 |
mature alpha-beta T cell | 5.29e-40 | 18 |
alpha-beta T cell | 5.29e-40 | 18 |
immature T cell | 5.29e-40 | 18 |
mature T cell | 5.29e-40 | 18 |
immature alpha-beta T cell | 5.29e-40 | 18 |
leukocyte | 8.83e-30 | 136 |
CD8-positive, alpha-beta T cell | 1.31e-25 | 11 |
nongranular leukocyte | 4.52e-24 | 115 |
hematopoietic cell | 6.87e-24 | 177 |
hematopoietic stem cell | 1.43e-22 | 168 |
hematopoietic lineage restricted progenitor cell | 4.80e-21 | 120 |
hematopoietic oligopotent progenitor cell | 1.57e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.57e-18 | 161 |
CD4-positive, alpha-beta T cell | 7.43e-14 | 6 |
natural killer cell | 1.46e-08 | 3 |
pro-NK cell | 1.46e-08 | 3 |
naive T cell | 1.18e-07 | 3 |
single nucleate cell | 1.97e-07 | 3 |
mononuclear cell | 1.97e-07 | 3 |
basophil | 3.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.09e-29 | 15 |
haemolymphatic fluid | 1.09e-29 | 15 |
organism substance | 1.09e-29 | 15 |
hemopoietic organ | 1.78e-10 | 7 |
immune organ | 1.78e-10 | 7 |
hemolymphoid system | 1.98e-09 | 108 |
hematopoietic system | 2.61e-09 | 98 |
blood island | 2.61e-09 | 98 |
thymus | 3.55e-09 | 4 |
hemolymphoid system gland | 3.55e-09 | 4 |
thymic region | 3.55e-09 | 4 |
pharyngeal gland | 3.55e-09 | 4 |
thymus primordium | 3.55e-09 | 4 |