FFCP PHASE1:Hg19::chr2:241375233..241375256,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2817 | |EntrezGene=2817 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4449 | |HGNC=4449 | ||
|TSSclassifier=strong | |||
|UniProt=P35052 | |UniProt=P35052 | ||
|association_with_transcript=118bp_to_NM_002081,uc002vyw.3_5end | |association_with_transcript=118bp_to_NM_002081,uc002vyw.3_5end | ||
|cluster_id=chr2:241375233..241375256,+ | |||
|coexpression_cluster_id=C1899 | |||
|description=CAGE_peak_3_at_GPC1_5end | |description=CAGE_peak_3_at_GPC1_5end | ||
|id=chr2:241375233..241375256,+ | |id=chr2:241375233..241375256,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.32e-29!180;CL:0000057!5.39e-17!75;CL:0000220!1.38e-14!246;CL:0002321!3.47e-14!248;CL:0000183!1.09e-11!59;CL:0000680!1.10e-11!57;CL:0000056!1.10e-11!57;CL:0000355!1.10e-11!57;CL:0000187!8.69e-11!54;CL:0000393!1.66e-09!60;CL:0000211!1.66e-09!60;CL:0000192!1.30e-08!42;CL:0000514!1.30e-08!42;CL:0000222!5.00e-08!119 | |ontology_enrichment_celltype=CL:0000055!9.32e-29!180;CL:0000057!5.39e-17!75;CL:0000220!1.38e-14!246;CL:0002321!3.47e-14!248;CL:0000183!1.09e-11!59;CL:0000680!1.10e-11!57;CL:0000056!1.10e-11!57;CL:0000355!1.10e-11!57;CL:0000187!8.69e-11!54;CL:0000393!1.66e-09!60;CL:0000211!1.66e-09!60;CL:0000192!1.30e-08!42;CL:0000514!1.30e-08!42;CL:0000222!5.00e-08!119 | ||
|ontology_enrichment_celltype_v019=CL:0000057;3.06e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.68e-17,76;CL:0000680,8.80e-13,58;CL:0000056,8.80e-13,58;CL:0000355,8.80e-13,58;CL:0000187,8.23e-12,55;CL:0002321,1.06e-11,250;CL:0000393,2.67e-10,61;CL:0000211,2.67e-10,61;CL:0000192,2.48e-09,43;CL:0000514,2.48e-09,43;CL:0000222,2.75e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.47e-23!365;UBERON:0000481!1.43e-18!347;UBERON:0005256!8.87e-15!143;UBERON:0000914!1.35e-14!83;UBERON:0002329!1.35e-14!83;UBERON:0003077!1.35e-14!83;UBERON:0003059!1.35e-14!83;UBERON:0007282!1.35e-14!83;UBERON:0009618!1.35e-14!83;UBERON:0007285!1.35e-14!83;UBERON:0000119!1.88e-14!312;UBERON:0000486!3.25e-14!82;UBERON:0000483!7.32e-14!309;UBERON:0003102!8.33e-14!95;UBERON:0003104!7.12e-13!238;UBERON:0009142!7.12e-13!238;UBERON:0002100!1.86e-12!216;UBERON:0000468!5.25e-12!659;UBERON:0004290!6.70e-12!70;UBERON:0000467!9.28e-12!625;UBERON:0000480!1.25e-11!626;UBERON:0001134!1.41e-11!61;UBERON:0002036!1.41e-11!61;UBERON:0003082!1.41e-11!61;UBERON:0002385!7.24e-11!63;UBERON:0001015!7.24e-11!63;UBERON:0000383!7.24e-11!63;UBERON:0000477!1.85e-09!286;UBERON:0000064!6.69e-09!219;UBERON:0000490!1.02e-08!138;UBERON:0007100!9.16e-08!27;UBERON:0004111!1.27e-07!241;UBERON:0002050!1.47e-07!605;UBERON:0005423!1.47e-07!605;UBERON:0000923!1.48e-07!604;UBERON:0005291!1.48e-07!604;UBERON:0006598!1.48e-07!604;UBERON:0002532!1.48e-07!604;UBERON:0000062!6.03e-07!511;UBERON:0000922!6.46e-07!612;UBERON:0002199!7.26e-07!45;UBERON:0002416!7.26e-07!45;UBERON:0001444!7.49e-07!48;UBERON:0004872!8.41e-07!84 | |ontology_enrichment_uberon=UBERON:0000475!2.47e-23!365;UBERON:0000481!1.43e-18!347;UBERON:0005256!8.87e-15!143;UBERON:0000914!1.35e-14!83;UBERON:0002329!1.35e-14!83;UBERON:0003077!1.35e-14!83;UBERON:0003059!1.35e-14!83;UBERON:0007282!1.35e-14!83;UBERON:0009618!1.35e-14!83;UBERON:0007285!1.35e-14!83;UBERON:0000119!1.88e-14!312;UBERON:0000486!3.25e-14!82;UBERON:0000483!7.32e-14!309;UBERON:0003102!8.33e-14!95;UBERON:0003104!7.12e-13!238;UBERON:0009142!7.12e-13!238;UBERON:0002100!1.86e-12!216;UBERON:0000468!5.25e-12!659;UBERON:0004290!6.70e-12!70;UBERON:0000467!9.28e-12!625;UBERON:0000480!1.25e-11!626;UBERON:0001134!1.41e-11!61;UBERON:0002036!1.41e-11!61;UBERON:0003082!1.41e-11!61;UBERON:0002385!7.24e-11!63;UBERON:0001015!7.24e-11!63;UBERON:0000383!7.24e-11!63;UBERON:0000477!1.85e-09!286;UBERON:0000064!6.69e-09!219;UBERON:0000490!1.02e-08!138;UBERON:0007100!9.16e-08!27;UBERON:0004111!1.27e-07!241;UBERON:0002050!1.47e-07!605;UBERON:0005423!1.47e-07!605;UBERON:0000923!1.48e-07!604;UBERON:0005291!1.48e-07!604;UBERON:0006598!1.48e-07!604;UBERON:0002532!1.48e-07!604;UBERON:0000062!6.03e-07!511;UBERON:0000922!6.46e-07!612;UBERON:0002199!7.26e-07!45;UBERON:0002416!7.26e-07!45;UBERON:0001444!7.49e-07!48;UBERON:0004872!8.41e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.53e-07;25 | |||
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|phase1_expression=3.99692434395225,4.49611100171065,4.36958652697511,12.0087958023756,3.12872766099101,0.872338524100369,5.06599756336621,5.68547886084148,7.57438321779532,1.72013755551056,4.88460817580699,4.80571018686379,4.22027165165526,2.84662611808107,5.96515276310248,4.03395087871065,6.62963980826375,6.57279081348636,5.36726078669558,3.0780264519197,2.65200898617529,3.44800193625897,3.14859585844162,3.83248390204076,3.64073654824928,0,0,0,0,0,0,3.67768489791571,5.72291245678675,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.70700859703636,4.73091478821062,4.69870898099936,4.51204119572301,7.9665585428453,0,3.40644409211845,3.68685786939865,1.10864698731282,2.10803485663503,1.70272798147026,8.01449634243593,4.82019775619758,0,0,0,0,0,0,1.78886166630035,1.72046919021225,1.04142150482278,1.69592382577203,2.09749718104953,1.37559020970034,1.04497483268405,0.258416759169329,1.06729878806013,0.66944122552934,0.402829317109147,0.760272105718513,1.22031028774085,0.367663080345869,2.43042584364528,0.357198913136319,0.22452937262617,0.225222960966644,0,0.949265659568129,0.549605231791222,0,0,4.36094052142534,10.4364109856017,3.16576279161449,2.91300197789081,9.75244510545967,2.83734705758686,6.16745360156538,2.1349799145941,5.92002116201184,4.35695449559673,2.02066008104532,3.10577615915572,2.4217188423189,4.60940739583999,3.51482147750695,4.05808099879417,1.71141546463335,4.48346041655403,0.939475989150119,1.29498355494505,1.12360645361799,4.28723759635276,2.21101771161182,4.54633437173368,3.56400857184616,8.90160945402805,10.9219363432563,19.4026898290384,1.5150250255866,1.12606667884768,2.21651292387346,7.02364193409341,9.50112166976961,7.21142682751665,3.74326204428069,7.5343646989322,5.97960688691989,4.02670612203168,8.40255069036326,3.09157587715317,7.72921620136887,16.9366339261747,7.08860595413318,3.70260619612555,2.52433774244115,2.85354685791128,2.10139873864455,24.4956618836464,9.47069723339819,6.27374191548804,5.02478218224572,4.09119180886252,3.15485054927904,0.121973706129595,0.265059536642971,0.116193942869518,0.518305275076852,0,0,1.56449532329816,8.36213219650751,2.76269842704961,2.3218396401599,7.94067429836544,4.37735160147422,3.20310911148393,2.89213235860178,3.30881918197182,2.61455332910887,4.74541238222193,2.15730093056263,2.74710051175484,2.69323009862473,1.4763109092493,9.81692416624121,6.5851841813024,7.3504355692771,1.26755034821831,1.96565443335525,1.18157981336281,0,0.245976877086227,1.88724591328378,4.2802611309364,4.49607013030478,1.40740561376283,2.31471112896324,2.28065813717227,12.4792174233549,1.44331342025273,4.75314660397815,1.76113041353732,0,0,0,0,1.71697232418975,0,0,0,6.56136837907439,4.53551746136921,4.25325291727159,4.38836761243957,4.06887513919547,11.1180976957911,0,0,0,0,0,1.65094525159639,2.29193055334967,3.51652341630141,6.84289784090821,0.925447434329912,3.60411669412701,0,3.36393253036082,4.3596006883328,3.6669142910475,1.16344544182,78.6844180874141,8.45302752556,8.51001973071586,16.6411899058186,7.9734286021264,9.92943924162948,7.99266537048298,5.43316375900961,17.9065129779176,4.11620168390384,7.16619605446217,6.75244702610837,1.58390374586686,2.71295439353627,2.61460037580088,2.89921674427965,0,0,0,2.15662369942424,5.7430967917057,11.4109524032575,4.48822050669496,3.49309748335652,7.34149949283572,0,0,0,0,3.30323011489202,1.30139853857622,3.09315525111078,1.67516265334349,2.55175500661265,0,0,0,3.55805325985506,8.00272833695483,1.89885516589815,3.53550464602372,4.99601168632053,7.88512075169673,4.21709093973768,2.10662269809403,4.5481500811197,3.10419213877515,3.32112799267718,5.8998133933345,3.5622281931914,8.41944977089785,15.4414540714885,0,0,0,1.81876542867756,6.65741758041988,6.04780586659361,5.70647957983187,2.455391572609,6.45518217196069,9.48229704492187,7.16390148693385,5.95159508231348,13.3576259800492,2.62156479464514,5.14929003408069,2.38168752440047,1.03850885836724,4.06736324609857,0.966875596732978,7.41873940122154,1.74953878978203,6.54442354538258,7.82992022428883,10.7522020266728,1.35359883872224,1.00119938235739,1.56869953835371,4.38417673959782,1.05551628892876,0,0.680374821106063,0.863663664408557,1.54227252690289,2.43851793789468,3.51182841698397,0.509752546090077,0.831076008928724,2.23874754722178,0,0,3.59030175162945,3.93617574839647,0.976135183992909,0.9273691048295,4.30376484646214,2.97034199714117,4.59412430396938,2.60024098414608,11.2478750890912,2.61010939388729,4.1593126620954,5.52613229014066,2.75673144969061,2.90034661144339,3.77043404176994,4.26133137080504,4.89676196057055,4.62797763010739,4.61256161676255,3.1903178123646,4.4509423576442,2.78907329578371,16.9998667288546,2.7881490806424,4.00443654228915,5.32306030317022,4.34966496037536,1.8532421910392,0.858749320451947,3.72158369359667,2.53103539774981,2.66882271493355,12.7948895655667,9.84259672478017,3.5002357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| ||
|short_description=p3@GPC1 | |short_description=p3@GPC1 | ||
}} | }} |
Latest revision as of 07:26, 16 September 2015
Short description: | p3@GPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GPC1_5end |
Coexpression cluster: | C1899_Mesenchymal_Fibroblast_Urothelial_Smooth_mucinous_Pericytes_Keratocytes |
Association with transcript: | 118bp_to_NM_002081, uc002vyw.3_5end |
EntrezGene: | GPC1 |
HGNC: | 4449 |
UniProt: | P35052 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.68e-17 | 76 |
muscle precursor cell | 8.80e-13 | 58 |
myoblast | 8.80e-13 | 58 |
multi-potent skeletal muscle stem cell | 8.80e-13 | 58 |
muscle cell | 8.23e-12 | 55 |
embryonic cell | 1.06e-11 | 250 |
electrically responsive cell | 2.67e-10 | 61 |
electrically active cell | 2.67e-10 | 61 |
smooth muscle cell | 2.48e-09 | 43 |
smooth muscle myoblast | 2.48e-09 | 43 |
mesodermal cell | 2.75e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.67e-15 | 83 |
surface structure | 7.68e-14 | 99 |
dense mesenchyme tissue | 1.08e-12 | 73 |
paraxial mesoderm | 1.56e-12 | 72 |
presumptive paraxial mesoderm | 1.56e-12 | 72 |
somite | 1.91e-12 | 71 |
presomitic mesoderm | 1.91e-12 | 71 |
presumptive segmental plate | 1.91e-12 | 71 |
dermomyotome | 1.91e-12 | 71 |
trunk paraxial mesoderm | 1.91e-12 | 71 |
skeletal muscle tissue | 2.19e-12 | 62 |
striated muscle tissue | 2.19e-12 | 62 |
myotome | 2.19e-12 | 62 |
epithelial vesicle | 1.82e-11 | 78 |
muscle tissue | 2.59e-11 | 64 |
musculature | 2.59e-11 | 64 |
musculature of body | 2.59e-11 | 64 |
trunk mesenchyme | 1.84e-10 | 122 |
mesenchyme | 4.35e-10 | 160 |
entire embryonic mesenchyme | 4.35e-10 | 160 |
cell layer | 7.92e-10 | 309 |
epithelium | 2.52e-09 | 306 |
primary circulatory organ | 4.15e-08 | 27 |
unilaminar epithelium | 1.67e-07 | 148 |
head | 4.69e-07 | 56 |
trunk | 5.53e-07 | 199 |
integument | 7.60e-07 | 46 |
integumental system | 7.60e-07 | 46 |