FFCP PHASE1:Hg19::chr16:30394143..30394155,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1731 | |EntrezGene=1731 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2879 | |HGNC=2879 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYJ6 | |UniProt=Q8WYJ6 | ||
|association_with_transcript=15bp_to_ENST00000321367,NM_052838,uc002dxy.2,uc010veq.1_5end | |||
|cluster_id=chr16:30394143..30394155,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_9_at_SEPT1_5end | |||
|id=chr16:30394143..30394155,- | |||
|ontology_enrichment_celltype=CL:0000838!3.23e-49!52;CL:0000542!4.52e-48!53;CL:0000051!4.52e-48!53;CL:0000084!2.92e-38!25;CL:0000827!2.92e-38!25;CL:0000791!1.57e-28!18;CL:0000789!1.57e-28!18;CL:0002420!1.57e-28!18;CL:0002419!1.57e-28!18;CL:0000790!1.57e-28!18;CL:0002087!9.44e-25!119;CL:0000738!4.76e-23!140;CL:0002031!1.22e-20!124;CL:0000037!2.38e-20!172;CL:0000566!2.38e-20!172;CL:0000988!1.81e-18!182;CL:0002032!2.05e-16!165;CL:0000837!2.05e-16!165;CL:0000625!2.34e-15!11;CL:0000624!1.46e-13!6;CL:0000945!4.46e-11!24;CL:0000826!4.46e-11!24;CL:0000898!4.22e-08!3;CL:0000842!6.12e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.27e-28;25!CL:0000791;4.37e-22;18!CL:0000789;4.37e-22;18!CL:0002419;4.37e-22;18!CL:0000898;1.05e-16;3!CL:0000624;2.43e-14;6!CL:0000625;1.04e-11;11!CL:0000815;1.66e-11;2!CL:0000792;1.66e-11;2!CL:0002677;1.66e-11;2!CL:0000542;8.26e-11;53!CL:0000895;6.60e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.39e-28,25;CL:0000827,2.39e-28,25;CL:0000791,4.61e-22,18;CL:0000789,4.61e-22,18;CL:0002420,4.61e-22,18;CL:0002419,4.61e-22,18;CL:0000790,4.61e-22,18;CL:0000838,5.56e-17,52;CL:0000898,8.95e-17,3;CL:0000542,1.32e-16,53;CL:0000051,1.32e-16,53;CL:0000624,2.52e-14,6;CL:0000625,1.06e-11,11;CL:0000815,1.54e-11,2;CL:0000792,1.54e-11,2;CL:0002677,1.54e-11,2;CL:0000810,6.08e-07,1;CL:0000895,6.08e-07,1;CL:0002436,6.08e-07,1;CL:0002427,6.08e-07,1;CL:0002428,6.08e-07,1;CL:0002429,6.08e-07,1;CL:0002433,6.08e-07,1;CL:0002431,6.08e-07,1;CL:0002432,6.08e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;4.37e-22;18!CL:0000051;8.26e-11;53!CL:0002427;6.60e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!5.57e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.86e-12!15;UBERON:0000179!1.86e-12!15;UBERON:0000463!1.86e-12!15;UBERON:0004177!3.12e-11!7;UBERON:0002370!5.99e-10!4;UBERON:0005058!5.99e-10!4;UBERON:0009113!5.99e-10!4;UBERON:0003295!5.99e-10!4;UBERON:0005562!5.99e-10!4;UBERON:0003408!8.63e-08!10;UBERON:0001042!1.74e-07!10;UBERON:0009145!1.74e-07!10;UBERON:0006562!9.88e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.69e-12;2!UBERON:0005058;2.69e-12;2!UBERON:0009113;2.69e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.61e-13,4;UBERON:0005058,2.61e-13,4;UBERON:0009113,2.61e-13,4;UBERON:0003295,2.61e-13,4;UBERON:0005562,2.61e-13,4;UBERON:0003351,5.07e-09,6;UBERON:0004177,8.64e-08,7;UBERON:0005057,8.64e-08,7 | |||
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| ||
|short_description=p9@SEPT1 | |||
}} | }} |
Latest revision as of 07:38, 16 September 2015
Short description: | p9@SEPT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SEPT1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 15bp_to_ENST00000321367, NM_052838, uc002dxy.2, uc010veq.1_5end |
EntrezGene: | SEPT1 |
HGNC: | 2879 |
UniProt: | Q8WYJ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.39e-28 | 25 |
pro-T cell | 2.39e-28 | 25 |
mature alpha-beta T cell | 4.61e-22 | 18 |
alpha-beta T cell | 4.61e-22 | 18 |
immature T cell | 4.61e-22 | 18 |
mature T cell | 4.61e-22 | 18 |
immature alpha-beta T cell | 4.61e-22 | 18 |
lymphoid lineage restricted progenitor cell | 5.56e-17 | 52 |
naive T cell | 8.95e-17 | 3 |
lymphocyte | 1.32e-16 | 53 |
common lymphoid progenitor | 1.32e-16 | 53 |
CD4-positive, alpha-beta T cell | 2.52e-14 | 6 |
CD8-positive, alpha-beta T cell | 1.06e-11 | 11 |
regulatory T cell | 1.54e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.54e-11 | 2 |
naive regulatory T cell | 1.54e-11 | 2 |
CD4-positive, alpha-beta thymocyte | 6.08e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.08e-07 | 1 |
mature CD4 single-positive thymocyte | 6.08e-07 | 1 |
resting double-positive thymocyte | 6.08e-07 | 1 |
double-positive blast | 6.08e-07 | 1 |
CD69-positive double-positive thymocyte | 6.08e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.08e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.08e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.08e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.61e-13 | 4 |
hemolymphoid system gland | 2.61e-13 | 4 |
thymic region | 2.61e-13 | 4 |
pharyngeal gland | 2.61e-13 | 4 |
thymus primordium | 2.61e-13 | 4 |
pharyngeal epithelium | 5.07e-09 | 6 |
hemopoietic organ | 8.64e-08 | 7 |
immune organ | 8.64e-08 | 7 |