FFCP PHASE1:Hg19::chr20:42984330..42984364,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=3172 | |EntrezGene=3172 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=5024 | |HGNC=5024 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000316673_5end | |association_with_transcript=0bp_to_ENST00000316673_5end | ||
|cluster_id=chr20:42984330..42984364,+ | |||
|description=CAGE_peak_2_at_HNF4A_5end | |description=CAGE_peak_2_at_HNF4A_5end | ||
|id=chr20:42984330..42984364,+ | |id=chr20:42984330..42984364,+ | ||
Latest revision as of 07:55, 16 September 2015
| Short description: | p2@HNF4A |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_HNF4A_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000316673_5end |
| EntrezGene: | HNF4A |
| HGNC: | 5024 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p2@HNF4A |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hepatocyte | 3.83e-25 | 12 |
| endodermal cell | 6.18e-14 | 58 |
| epithelial cell of stomach | 1.64e-07 | 3 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system | 5.73e-40 | 25 |
| intestine | 7.84e-38 | 17 |
| digestive tract diverticulum | 5.71e-28 | 23 |
| epithelium of foregut-midgut junction | 1.45e-25 | 25 |
| anatomical boundary | 1.45e-25 | 25 |
| hepatobiliary system | 1.45e-25 | 25 |
| foregut-midgut junction | 1.45e-25 | 25 |
| septum transversum | 1.45e-25 | 25 |
| hepatic diverticulum | 1.32e-24 | 22 |
| liver primordium | 1.32e-24 | 22 |
Showing 1 to 10 of 42 entries
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system cancer | 2.33e-12 | 14 |
| adenocarcinoma | 1.65e-11 | 25 |
| tubular adenocarcinoma | 6.75e-11 | 2 |
| signet ring cell adenocarcinoma | 1.11e-10 | 2 |
| carcinoma | 1.74e-08 | 106 |
Showing 1 to 5 of 5 entries
