Personal tools

DOID:3119

From FANTOM5_SSTAR

Jump to: navigation, search

Name:gastrointestinal system cancer
Namespace:FANTOM
Definition:"An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
Xrefs:
links:

ICD9CM:239.0
MSH:D004067
SNOMEDCT_2010_1_31:126768004
SNOMEDCT_2010_1_31:128348002
SNOMEDCT_2010_1_31:128415001
SNOMEDCT_2010_1_31:189527000
SNOMEDCT_2010_1_31:276806006
SNOMEDCT_2010_1_31:367543008
SNOMEDCT_2010_1_31:428905002
SNOMEDCT_2010_1_31:93811007
UMLS_CUI:C0012243
UMLS_CUI:C0017185

UMLS_CUI:C0685938
Synonyms: "digestive system cancer" EXACT []
"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890]
"GI tumor" EXACT [NCI2004_11_17:C3052]
Alt_id: DOID:4945
DOID:8377

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data