DOID:3119
From FANTOM5_SSTAR
Name: | gastrointestinal system cancer | |
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Namespace: | FANTOM | |
Definition: | "An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract] | |
Xrefs: |
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Synonyms: |
"digestive system cancer" EXACT [] "gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890] "GI tumor" EXACT [NCI2004_11_17:C3052] | |
Alt_id: |
DOID:4945 DOID:8377 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:0050686(organ system cancer) |
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Children
is a: | DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10473-106I5
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10516-107E3
- 10520-107E7
... further results Mouse (Mus musculus)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10473-106I5
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10516-107E3
- 10520-107E7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data