FFCP PHASE1:Hg19::chr9:137734487..137734510,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1289 | |EntrezGene=1289 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2209 | |HGNC=2209 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=392bp_to_BC032405_5end | |association_with_transcript=392bp_to_BC032405_5end | ||
|cluster_id=chr9:137734487..137734510,+ | |||
|coexpression_cluster_id=C396 | |coexpression_cluster_id=C396 | ||
|description=CAGE_peak_5_at_COL5A1_5end | |description=CAGE_peak_5_at_COL5A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.70e-33!180;CL:0000057!6.50e-20!75;CL:0000144!1.49e-11!625;CL:0000680!6.31e-11!57;CL:0000056!6.31e-11!57;CL:0000355!6.31e-11!57;CL:0000183!6.54e-11!59;CL:0002371!1.07e-10!591;CL:0000187!4.12e-10!54;CL:0000222!7.17e-10!119;CL:0000393!1.59e-08!60;CL:0000211!1.59e-08!60;CL:0002334!2.61e-08!12;CL:0000548!2.98e-08!679;CL:0000004!2.98e-08!679;CL:0000255!2.98e-08!679;CL:0000048!3.69e-08!430;CL:0000012!7.49e-08!682;CL:0000192!7.81e-08!42;CL:0000514!7.81e-08!42;CL:0000723!1.43e-07!436;CL:0000499!3.06e-07!27;CL:0000034!3.35e-07!444 | |ontology_enrichment_celltype=CL:0000055!3.70e-33!180;CL:0000057!6.50e-20!75;CL:0000144!1.49e-11!625;CL:0000680!6.31e-11!57;CL:0000056!6.31e-11!57;CL:0000355!6.31e-11!57;CL:0000183!6.54e-11!59;CL:0002371!1.07e-10!591;CL:0000187!4.12e-10!54;CL:0000222!7.17e-10!119;CL:0000393!1.59e-08!60;CL:0000211!1.59e-08!60;CL:0002334!2.61e-08!12;CL:0000548!2.98e-08!679;CL:0000004!2.98e-08!679;CL:0000255!2.98e-08!679;CL:0000048!3.69e-08!430;CL:0000012!7.49e-08!682;CL:0000192!7.81e-08!42;CL:0000514!7.81e-08!42;CL:0000723!1.43e-07!436;CL:0000499!3.06e-07!27;CL:0000034!3.35e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000349;8.25e-14;19!CL:0000134;7.78e-11;55!CL:0002334;9.00e-11;12!CL:0000048;1.07e-08;58!CL:0000723;1.26e-08;61!CL:0000057;9.25e-08;73!CL:0000499;1.43e-07;28!CL:0002620;2.35e-07;23!CL:0000034;3.10e-07;69!CL:0002320;4.85e-07;188 | |ontology_enrichment_celltype_v019=CL:0000349;8.25e-14;19!CL:0000134;7.78e-11;55!CL:0002334;9.00e-11;12!CL:0000048;1.07e-08;58!CL:0000723;1.26e-08;61!CL:0000057;9.25e-08;73!CL:0000499;1.43e-07;28!CL:0002620;2.35e-07;23!CL:0000034;3.10e-07;69!CL:0002320;4.85e-07;188 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-20,76;CL:0000048,6.65e-16,427;CL:0000723,3.74e-15,433;CL:0000034,3.42e-14,441;CL:0000349,5.42e-14,19;CL:0002334,1.36e-10,12;CL:0002320,2.79e-10,361;CL:0000134,9.35e-10,354;CL:0000219,5.74e-09,386;CL:0000192,1.38e-08,43;CL:0000514,1.38e-08,43;CL:0000187,4.30e-08,55;CL:0000680,4.97e-08,58;CL:0000056,4.97e-08,58;CL:0000355,4.97e-08,58;CL:0000499,1.98e-07,28;CL:0002620,3.19e-07,23 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!3.72e-11!63;UBERON:0001015!3.72e-11!63;UBERON:0000383!3.72e-11!63;UBERON:0001134!4.95e-11!61;UBERON:0002036!4.95e-11!61;UBERON:0003082!4.95e-11!61;UBERON:0000914!3.06e-10!83;UBERON:0002329!3.06e-10!83;UBERON:0003077!3.06e-10!83;UBERON:0003059!3.06e-10!83;UBERON:0007282!3.06e-10!83;UBERON:0009618!3.06e-10!83;UBERON:0007285!3.06e-10!83;UBERON:0004290!7.15e-10!70;UBERON:0005256!9.14e-09!143;UBERON:0004872!1.34e-08!84;UBERON:0000486!1.53e-08!82;UBERON:0000478!1.84e-08!24;UBERON:0005631!3.67e-08!14;UBERON:0000158!3.67e-08!14;UBERON:0004923!4.45e-07!57;UBERON:0002049!5.44e-07!79;UBERON:0007798!5.44e-07!79;UBERON:0000490!7.36e-07!138 | |ontology_enrichment_uberon=UBERON:0002385!3.72e-11!63;UBERON:0001015!3.72e-11!63;UBERON:0000383!3.72e-11!63;UBERON:0001134!4.95e-11!61;UBERON:0002036!4.95e-11!61;UBERON:0003082!4.95e-11!61;UBERON:0000914!3.06e-10!83;UBERON:0002329!3.06e-10!83;UBERON:0003077!3.06e-10!83;UBERON:0003059!3.06e-10!83;UBERON:0007282!3.06e-10!83;UBERON:0009618!3.06e-10!83;UBERON:0007285!3.06e-10!83;UBERON:0004290!7.15e-10!70;UBERON:0005256!9.14e-09!143;UBERON:0004872!1.34e-08!84;UBERON:0000486!1.53e-08!82;UBERON:0000478!1.84e-08!24;UBERON:0005631!3.67e-08!14;UBERON:0000158!3.67e-08!14;UBERON:0004923!4.45e-07!57;UBERON:0002049!5.44e-07!79;UBERON:0007798!5.44e-07!79;UBERON:0000490!7.36e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.86e-11;24!UBERON:0005631;2.78e-09;10!UBERON:0000158;2.78e-09;10!UBERON:0003688;7.75e-08;6!UBERON:0002358;7.75e-08;6!UBERON:0003684;7.75e-08;6!UBERON:0001178;7.75e-08;6!UBERON:0002384;7.78e-08;198!UBERON:0004457;1.44e-07;9!UBERON:0000042;1.44e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0000478;1.86e-11;24!UBERON:0005631;2.78e-09;10!UBERON:0000158;2.78e-09;10!UBERON:0003688;7.75e-08;6!UBERON:0002358;7.75e-08;6!UBERON:0003684;7.75e-08;6!UBERON:0001178;7.75e-08;6!UBERON:0002384;7.78e-08;198!UBERON:0004457;1.44e-07;9!UBERON:0000042;1.44e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,1.37e-11,24;UBERON:0002384,6.96e-11,371;UBERON:0005631,1.37e-09,14;UBERON:0000158,1.37e-09,14;UBERON:0001134,1.19e-08,62;UBERON:0002036,1.19e-08,62;UBERON:0003082,1.19e-08,62;UBERON:0007503,1.70e-08,78;UBERON:0007524,3.87e-08,73;UBERON:0002385,4.08e-08,64;UBERON:0001015,4.08e-08,64;UBERON:0000383,4.08e-08,64;UBERON:0002329,8.61e-08,71;UBERON:0003059,8.61e-08,71;UBERON:0007282,8.61e-08,71;UBERON:0004290,8.61e-08,71;UBERON:0009618,8.61e-08,71;UBERON:0003688,8.94e-08,6;UBERON:0002358,8.94e-08,6;UBERON:0003684,8.94e-08,6;UBERON:0001178,8.94e-08,6;UBERON:0005256,1.41e-07,122;UBERON:0003077,1.46e-07,72;UBERON:0007285,1.46e-07,72;UBERON:0004871,1.67e-07,8 | |||
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| ||
|short_description=p5@COL5A1 | |short_description=p5@COL5A1 | ||
}} | }} |
Latest revision as of 09:21, 16 September 2015
Short description: | p5@COL5A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL5A1_5end |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | 392bp_to_BC032405_5end |
EntrezGene: | COL5A1 |
HGNC: | 2209 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.04e-20 | 76 |
multi fate stem cell | 6.65e-16 | 427 |
somatic stem cell | 3.74e-15 | 433 |
stem cell | 3.42e-14 | 441 |
extraembryonic cell | 5.42e-14 | 19 |
preadipocyte | 1.36e-10 | 12 |
connective tissue cell | 2.79e-10 | 361 |
mesenchymal cell | 9.35e-10 | 354 |
motile cell | 5.74e-09 | 386 |
smooth muscle cell | 1.38e-08 | 43 |
smooth muscle myoblast | 1.38e-08 | 43 |
muscle cell | 4.30e-08 | 55 |
muscle precursor cell | 4.97e-08 | 58 |
myoblast | 4.97e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.97e-08 | 58 |
stromal cell | 1.98e-07 | 28 |
skin fibroblast | 3.19e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 1.37e-11 | 24 |
connective tissue | 6.96e-11 | 371 |
extraembryonic membrane | 1.37e-09 | 14 |
membranous layer | 1.37e-09 | 14 |
skeletal muscle tissue | 1.19e-08 | 62 |
striated muscle tissue | 1.19e-08 | 62 |
myotome | 1.19e-08 | 62 |
epithelial vesicle | 1.70e-08 | 78 |
dense mesenchyme tissue | 3.87e-08 | 73 |
muscle tissue | 4.08e-08 | 64 |
musculature | 4.08e-08 | 64 |
musculature of body | 4.08e-08 | 64 |
somite | 8.61e-08 | 71 |
presomitic mesoderm | 8.61e-08 | 71 |
presumptive segmental plate | 8.61e-08 | 71 |
dermomyotome | 8.61e-08 | 71 |
trunk paraxial mesoderm | 8.61e-08 | 71 |
omentum | 8.94e-08 | 6 |
peritoneum | 8.94e-08 | 6 |
abdominal cavity | 8.94e-08 | 6 |
visceral peritoneum | 8.94e-08 | 6 |
trunk mesenchyme | 1.41e-07 | 122 |
paraxial mesoderm | 1.46e-07 | 72 |
presumptive paraxial mesoderm | 1.46e-07 | 72 |
somatic layer of lateral plate mesoderm | 1.67e-07 | 8 |