FFCP PHASE1:Hg19::chr6:158490395..158490407,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8871 | |EntrezGene=8871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11504 | |HGNC=11504 | ||
|TSSclassifier=strong | |||
|UniProt=B4DLC4 | |UniProt=B4DLC4 | ||
|association_with_transcript=-153bp_to_AK296935_5end | |association_with_transcript=-153bp_to_AK296935_5end | ||
|cluster_id=chr6:158490395..158490407,+ | |||
|description=CAGE_peak_9_at_SYNJ2_5end | |description=CAGE_peak_9_at_SYNJ2_5end | ||
|id=chr6:158490395..158490407,+ | |id=chr6:158490395..158490407,+ | ||
|ontology_enrichment_celltype=CL:0002139!5.47e-16!24;CL:0000071!1.36e-12!18;CL:0002546!1.36e-12!18;CL:0000115!2.35e-12!35;CL:1000413!5.77e-10!9;CL:0000213!8.77e-10!57;CL:0000215!8.77e-10!57;CL:0002078!7.92e-09!44;CL:0000222!3.26e-08!119;CL:0002543!2.02e-07!6;CL:0000708!6.11e-07!3;CL:0000055!7.44e-07!180 | |ontology_enrichment_celltype=CL:0002139!5.47e-16!24;CL:0000071!1.36e-12!18;CL:0002546!1.36e-12!18;CL:0000115!2.35e-12!35;CL:1000413!5.77e-10!9;CL:0000213!8.77e-10!57;CL:0000215!8.77e-10!57;CL:0002078!7.92e-09!44;CL:0000222!3.26e-08!119;CL:0002543!2.02e-07!6;CL:0000708!6.11e-07!3;CL:0000055!7.44e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0002602;9.33e-21;2!CL:0000708;8.15e-14;3!CL:0002564;1.50e-13;3!CL:0000222;8.61e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,8.49e-21,2;CL:0000708,6.96e-14,3;CL:0002564,1.70e-13,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3347;8.61e-11;1!DOID:201;2.26e-07;6!DOID:0060100;2.26e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,6.14e-11,1;DOID:201,2.02e-07,6;DOID:0060100,2.02e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.26e-15!79;UBERON:0007798!1.26e-15!79;UBERON:0001986!1.36e-12!18;UBERON:0004638!1.36e-12!18;UBERON:0004852!1.36e-12!18;UBERON:0004535!5.77e-11!110;UBERON:0000055!1.81e-10!69;UBERON:0001009!2.02e-10!113;UBERON:0003915!5.77e-10!9;UBERON:0004700!5.77e-10!9;UBERON:0001917!5.77e-10!9;UBERON:0000487!9.95e-10!22;UBERON:0001981!1.13e-08!60;UBERON:0007500!1.13e-08!60;UBERON:0004537!1.13e-08!60;UBERON:0006965!1.13e-08!60;UBERON:0001637!3.31e-08!42;UBERON:0003509!3.31e-08!42;UBERON:0004572!3.31e-08!42;UBERON:0006914!3.38e-08!25;UBERON:0000488!8.96e-08!4;UBERON:0002203!1.24e-07!6;UBERON:0001768!1.24e-07!6;UBERON:0002200!1.95e-07!11;UBERON:0006876!1.95e-07!11;UBERON:0003210!6.11e-07!3;UBERON:0003586!9.70e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;4.51e-31;5!UBERON:0002216;4.51e-31;5!UBERON:0011134;4.51e-31;5!UBERON:0002209;4.51e-31;5!UBERON:0002213;4.51e-31;5!UBERON:0007844;4.51e-31;5!UBERON:0011138;4.51e-31;5!UBERON:0001130;4.51e-31;5!UBERON:0001066;4.51e-31;5!UBERON:0001468;4.51e-31;5!UBERON:0006444;9.33e-21;2!UBERON:0001995;9.33e-21;2!UBERON:0004715;9.33e-21;2!UBERON:0004905;1.52e-19;8!UBERON:0000982;1.52e-19;8!UBERON:0004770;1.52e-19;8!UBERON:0002418;3.63e-14;3!UBERON:0004755;3.63e-14;3!UBERON:0003210;8.15e-14;3!UBERON:0002242;1.50e-13;3!UBERON:0004765;7.54e-13;26!UBERON:0007195;8.61e-11;1!UBERON:0000075;6.97e-10;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,4.90e-31,5;UBERON:0002216,4.90e-31,5;UBERON:0011134,4.90e-31,5;UBERON:0002209,4.90e-31,5;UBERON:0002213,4.90e-31,5;UBERON:0005856,4.90e-31,5;UBERON:0005866,4.90e-31,5;UBERON:0005863,4.90e-31,5;UBERON:0007844,4.90e-31,5;UBERON:0011138,4.90e-31,5;UBERON:0001130,4.90e-31,5;UBERON:0001066,4.90e-31,5;UBERON:0001468,4.90e-31,5;UBERON:0006444,8.49e-21,2;UBERON:0001995,8.49e-21,2;UBERON:0004715,8.49e-21,2;UBERON:0004905,1.60e-19,8;UBERON:0000982,1.60e-19,8;UBERON:0004770,1.60e-19,8;UBERON:0002418,3.41e-14,3;UBERON:0004755,3.41e-14,3;UBERON:0003210,6.96e-14,3;UBERON:0002242,1.70e-13,3;UBERON:0003068,1.70e-13,3;UBERON:0002328,1.70e-13,3;UBERON:0004880,1.70e-13,3;UBERON:0007195,1.10e-10,1;UBERON:0000075,7.15e-10,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,5.07442047136191,2.65117900582333,0,0,0,0,0.369363174230364,1.02000345622126,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.289693037921647,0,0,0.0945348171640679,0.886917589850256,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,1.13061588384802,1.25849830862972,0.825354125820202,0.417989933073621,0.516833518338658,0.35576626268671,0,0,0,0,0.367663080345869,0,0.535798369704479,0.22452937262617,0.225222960966644,0,1.89853131913626,0.366403487860815,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0.326923806226917,0.302714855289863,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,2.61576041299968,1.3200891447771,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67737398844108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59498939234882,1.00034104211935,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0.368738337083406,0,0,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0,0,0,0,0,0,0,0,0,1.03850885836724,0.116210378459959,0,0,0,0.34444334449382,0,0,0,0,0,0,0,0,1.02056223165909,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0.616067160352178,0.532306030317022,0,0.18532421910392,0,0,1.58189712359363,0,0,0,0,0.78494864019923,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.306806047506464,0,0,0.179736702294654,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0.661983911750998,0.627865836814451,0,0,0,0,0.0979923974143777,0,0,0.343972064943233,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.271808412147228,0.523014231561666,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.340776043570843,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,1.26184898228651,0,0,0,0,2.31522474323834,0,0.358177682162975,0,0,0,0,0.675769762612291,0,0,1.21543982470953,0,0,0,0,0,0.245772908753719,0,0,0,0,3.40509572140102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,1.3807198521202,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0.449126010532934,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,5.07442047136191,2.65117900582333,0,0,0,0,0.369363174230364,1.02000345622126,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.289693037921647,0,0,0.0945348171640679,0.886917589850256,0.966182642624386,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,1.13061588384802,1.25849830862972,0.825354125820202,0.417989933073621,0.516833518338658,0.35576626268671,0,0,0,0,0.367663080345869,0,0.535798369704479,0.22452937262617,0.225222960966644,0,1.89853131913626,0.366403487860815,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0.326923806226917,0.302714855289863,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0,0,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,2.61576041299968,1.3200891447771,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67737398844108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59498939234882,1.00034104211935,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0.368738337083406,0,0,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0,0,0,0,0,0,0,0,0,1.03850885836724,0.116210378459959,0,0,0,0.34444334449382,0,0,0,0,0,0,0,0,1.02056223165909,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0.616067160352178,0.532306030317022,0,0.18532421910392,0,0,1.58189712359363,0,0,0,0,0.78494864019923,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.306806047506464,0,0,0.179736702294654,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0.661983911750998,0.627865836814451,0,0,0,0,0.0979923974143777,0,0,0.343972064943233,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.271808412147228,0.523014231561666,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.340776043570843,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,1.26184898228651,0,0,0,0,2.31522474323834,0,0.358177682162975,0,0,0,0,0.675769762612291,0,0,1.21543982470953,0,0,0,0,0,0.245772908753719,0,0,0,0,3.40509572140102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,1.3807198521202,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0.449126010532934,0,0,0,0,0,0 | ||
|short_description=p9@SYNJ2 | |short_description=p9@SYNJ2 | ||
}} | }} |
Latest revision as of 11:33, 16 September 2015
Short description: | p9@SYNJ2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SYNJ2_5end |
Coexpression cluster: | NA |
Association with transcript: | -153bp_to_AK296935_5end |
EntrezGene: | SYNJ2 |
HGNC: | 11504 |
UniProt: | B4DLC4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 8.49e-21 | 2 |
leptomeningeal cell | 6.96e-14 | 3 |
nucleus pulposus cell of intervertebral disc | 1.70e-13 | 3 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 4.90e-31 | 5 |
symphysis | 4.90e-31 | 5 |
nonsynovial joint | 4.90e-31 | 5 |
fibrous joint | 4.90e-31 | 5 |
cartilaginous joint | 4.90e-31 | 5 |
developing mesenchymal condensation | 4.90e-31 | 5 |
pre-cartilage condensation | 4.90e-31 | 5 |
cartilaginous condensation | 4.90e-31 | 5 |
cartilage element | 4.90e-31 | 5 |
post-cranial axial skeletal system | 4.90e-31 | 5 |
vertebral column | 4.90e-31 | 5 |
intervertebral disk | 4.90e-31 | 5 |
intervertebral joint | 4.90e-31 | 5 |
annulus fibrosus | 8.49e-21 | 2 |
fibrocartilage | 8.49e-21 | 2 |
annulus fibrosus disci intervertebralis | 8.49e-21 | 2 |
articulation | 1.60e-19 | 8 |
skeletal joint | 1.60e-19 | 8 |
articular system | 1.60e-19 | 8 |
cartilage tissue | 3.41e-14 | 3 |
skeletal tissue | 3.41e-14 | 3 |
blood-cerebrospinal fluid barrier | 6.96e-14 | 3 |
nucleus pulposus | 1.70e-13 | 3 |
axial mesoderm | 1.70e-13 | 3 |
notochord | 1.70e-13 | 3 |
chordamesoderm | 1.70e-13 | 3 |
stroma of bone marrow | 1.10e-10 | 1 |
subdivision of skeletal system | 7.15e-10 | 16 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 6.14e-11 | 1 |
connective tissue cancer | 2.02e-07 | 6 |
musculoskeletal system cancer | 2.02e-07 | 6 |