FFCP PHASE1:Hg19::chr1:236686717..236686738,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:236686717..236686738,+
|short_description=p7@LGALS8
|description=CAGE_peak_7_at_LGALS8_5end
|association_with_transcript=0bp_to_ENST00000341872,ENST0000045...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3964 | |EntrezGene=3964 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6569 | |HGNC=6569 | ||
|TSSclassifier=strong | |||
|UniProt=O00214 | |UniProt=O00214 | ||
|association_with_transcript=0bp_to_ENST00000341872,ENST00000450372,NM_006499,NM_201543,uc001hxy.1,uc001hxz.1,uc009xgg.1_5end | |||
|cluster_id=chr1:236686717..236686738,+ | |||
|coexpression_cluster_id=C258 | |||
|description=CAGE_peak_7_at_LGALS8_5end | |||
|id=chr1:236686717..236686738,+ | |||
|ontology_enrichment_celltype=CL:0000223!1.52e-19!59;CL:0002076!1.65e-16!43;CL:0000066!1.71e-14!254;CL:0002251!1.75e-12!21 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.40e-10;12!CL:0002553;7.35e-07;1!CL:0000167;9.93e-07;1!CL:0000164;9.93e-07;1!CL:0000502;9.93e-07;1!CL:0000172;9.93e-07;1!CL:0000173;9.93e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,2.03e-14,58;CL:0000182,1.46e-10,12;CL:0000066,3.28e-09,253;CL:0002553,7.77e-07,1;CL:0000167,9.67e-07,1;CL:0000164,9.67e-07,1;CL:0000502,9.67e-07,1;CL:0000172,9.67e-07,1;CL:0000173,9.67e-07,1;CL:0002351,9.67e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;7.51e-14;13!UBERON:0004161;1.45e-11;11!UBERON:0001041;5.17e-10;30!CL:0000223;4.20e-07;58!UBERON:0008425;5.57e-07;1!CL:0002351;9.93e-07;1 | |||
|ontology_enrichment_disease=DOID:305!2.38e-19!106;DOID:0050687!1.31e-15!143;DOID:1749!3.96e-10!14;DOID:7!2.08e-08!39;DOID:162!9.88e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:305;3.59e-09;106!DOID:1749;3.77e-09;14!DOID:7;5.82e-09;39!DOID:4430;9.93e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.63e-21,106;DOID:0050687,1.20e-20,143;DOID:162,1.63e-13,235;DOID:14566,4.21e-13,239;DOID:7,1.58e-11,39;DOID:1749,3.42e-09,14;DOID:4430,9.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.36e-24!169;UBERON:0000925!4.36e-24!169;UBERON:0006595!4.36e-24!169;UBERON:0001007!5.24e-22!155;UBERON:0001555!5.24e-22!155;UBERON:0007026!5.24e-22!155;UBERON:0004921!2.12e-19!129;UBERON:0004185!2.12e-19!129;UBERON:0000077!1.07e-15!130;UBERON:0001041!1.74e-12!98;UBERON:0005409!2.37e-11!35;UBERON:0005911!4.53e-11!82;UBERON:0000344!4.02e-10!12;UBERON:0001004!4.85e-10!72;UBERON:0000160!1.45e-09!27;UBERON:0000466!6.69e-09!126;UBERON:0000161!1.32e-08!35;UBERON:0002108!1.32e-08!14;UBERON:0005177!7.89e-08!107;UBERON:0000481!9.12e-08!347;UBERON:0002075!1.07e-07!18;UBERON:0003929!1.45e-07!54;UBERON:0001045!6.21e-07!11;UBERON:0002114!6.31e-07!12;UBERON:0003729!6.50e-07!5;UBERON:0005153!7.67e-07!37;UBERON:0000464!9.83e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;2.08e-12;10!UBERON:0000949;4.61e-08;43!UBERON:0002423;6.40e-07;25!UBERON:0002075;8.65e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,1.98e-12,10;UBERON:0000949,1.78e-09,45;UBERON:0008835,6.13e-08,22;UBERON:0003894,6.13e-08,22;UBERON:0009854,1.44e-07,23;UBERON:0007499,6.48e-07,25;UBERON:0009497,6.48e-07,25;UBERON:0000015,6.48e-07,25;UBERON:0002423,6.48e-07,25;UBERON:0006235,6.48e-07,25;UBERON:0004161,6.48e-07,25;UBERON:0002075,8.43e-07,18 | |||
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| ||
|short_description=p7@LGALS8 | |||
}} | }} |
Latest revision as of 14:19, 16 September 2015
Short description: | p7@LGALS8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LGALS8_5end |
Coexpression cluster: | C258_hepatoblastoma_hepatocellular_signet_colon_Intestinal_Prostate_gastric |
Association with transcript: | 0bp_to_ENST00000341872, ENST00000450372, NM_006499, NM_201543, uc001hxy.1, uc001hxz.1, uc009xgg.1_5end |
EntrezGene: | LGALS8 |
HGNC: | 6569 |
UniProt: | O00214 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 2.03e-14 | 58 |
hepatocyte | 1.46e-10 | 12 |
epithelial cell | 3.28e-09 | 253 |
lung fibroblast | 7.77e-07 | 1 |
peptide hormone secreting cell | 9.67e-07 | 1 |
enteroendocrine cell | 9.67e-07 | 1 |
type D enteroendocrine cell | 9.67e-07 | 1 |
somatostatin secreting cell | 9.67e-07 | 1 |
pancreatic D cell | 9.67e-07 | 1 |
progenitor cell of endocrine pancreas | 9.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
pancreas | 1.98e-12 | 10 |
endocrine system | 1.78e-09 | 45 |
hepatic diverticulum | 6.13e-08 | 22 |
liver primordium | 6.13e-08 | 22 |
digestive tract diverticulum | 1.44e-07 | 23 |
epithelial sac | 6.48e-07 | 25 |
epithelium of foregut-midgut junction | 6.48e-07 | 25 |
anatomical boundary | 6.48e-07 | 25 |
hepatobiliary system | 6.48e-07 | 25 |
foregut-midgut junction | 6.48e-07 | 25 |
septum transversum | 6.48e-07 | 25 |
viscus | 8.43e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.63e-21 | 106 |
cell type cancer | 1.20e-20 | 143 |
cancer | 1.63e-13 | 235 |
disease of cellular proliferation | 4.21e-13 | 239 |
disease of anatomical entity | 1.58e-11 | 39 |
squamous cell carcinoma | 3.42e-09 | 14 |
somatostatinoma | 9.67e-07 | 1 |