FFCP PHASE1:Hg19::chr7:142198109..142198132,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=12181 | |HGNC=12181 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000471935_5end | |association_with_transcript=-40bp_to_ENST00000471935_5end | ||
|cluster_id=chr7:142198109..142198132,- | |||
|coexpression_cluster_id=C496 | |coexpression_cluster_id=C496 | ||
|description=CAGE_peak_2_at_TRBV11-2_5end | |description=CAGE_peak_2_at_TRBV11-2_5end | ||
|id=chr7:142198109..142198132,- | |id=chr7:142198109..142198132,- | ||
|ontology_enrichment_celltype=CL:0000815;2.45e-12;2!CL:0000792;2.45e-12;2!CL:0002677;2.45e-12;2!CL:0000791;1.13e-11;18!CL:0000789;1.13e-11;18!CL:0002419;1.13e-11;18!CL:0000625;5.63e-09;11!CL:0000898;1.17e-08;3!CL:0000084;1.39e-08;25 | |ontology_enrichment_celltype=CL:0000791!1.82e-50!18;CL:0000789!1.82e-50!18;CL:0002420!1.82e-50!18;CL:0002419!1.82e-50!18;CL:0000790!1.82e-50!18;CL:0000084!1.75e-35!25;CL:0000827!1.75e-35!25;CL:0000625!1.75e-34!11;CL:0000624!1.13e-20!6;CL:0000838!2.17e-20!52;CL:0000542!6.15e-20!53;CL:0000051!6.15e-20!53;CL:0000815!2.73e-11!2;CL:0000792!2.73e-11!2;CL:0002677!2.73e-11!2;CL:0000738!3.66e-08!140;CL:0002087!6.13e-08!119;CL:0000898!8.45e-08!3;CL:0002031!1.76e-07!124;CL:0000623!4.59e-07!3;CL:0000825!4.59e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0000815;2.45e-12;2!CL:0000792;2.45e-12;2!CL:0002677;2.45e-12;2!CL:0000791;1.13e-11;18!CL:0000789;1.13e-11;18!CL:0002419;1.13e-11;18!CL:0000625;5.63e-09;11!CL:0000898;1.17e-08;3!CL:0000084;1.39e-08;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000815,3.24e-12,2;CL:0000792,3.24e-12,2;CL:0002677,3.24e-12,2;CL:0000791,1.19e-11,18;CL:0000789,1.19e-11,18;CL:0002420,1.19e-11,18;CL:0002419,1.19e-11,18;CL:0000790,1.19e-11,18;CL:0000625,5.41e-09,11;CL:0000898,1.40e-08,3;CL:0000084,1.45e-08,25;CL:0000827,1.45e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.13e-11;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002370;1.48e-12;2!UBERON:0005058;1.48e-12;2!UBERON:0009113;1.48e-12;2 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.48e-12;2!UBERON:0005058;1.48e-12;2!UBERON:0009113;1.48e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.50e-07,4;UBERON:0005058,6.50e-07,4;UBERON:0009113,6.50e-07,4;UBERON:0003295,6.50e-07,4;UBERON:0005562,6.50e-07,4 | |||
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|short_description=p2@TRBV11-2 | |short_description=p2@TRBV11-2 | ||
}} | }} |
Latest revision as of 20:02, 16 September 2015
Short description: | p2@TRBV11-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRBV11-2_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | -40bp_to_ENST00000471935_5end |
EntrezGene: | NA |
HGNC: | 12181 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 3.24e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.24e-12 | 2 |
naive regulatory T cell | 3.24e-12 | 2 |
mature alpha-beta T cell | 1.19e-11 | 18 |
alpha-beta T cell | 1.19e-11 | 18 |
immature T cell | 1.19e-11 | 18 |
mature T cell | 1.19e-11 | 18 |
immature alpha-beta T cell | 1.19e-11 | 18 |
CD8-positive, alpha-beta T cell | 5.41e-09 | 11 |
naive T cell | 1.40e-08 | 3 |
T cell | 1.45e-08 | 25 |
pro-T cell | 1.45e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.50e-07 | 4 |
hemolymphoid system gland | 6.50e-07 | 4 |
thymic region | 6.50e-07 | 4 |
pharyngeal gland | 6.50e-07 | 4 |
thymus primordium | 6.50e-07 | 4 |