FFCP PHASE1:Hg19::chr3:18480217..18480239,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6304 | |EntrezGene=6304 | ||
| Line 8: | Line 8: | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000487699_5end | |association_with_transcript=0bp_to_ENST00000487699_5end | ||
|cluster_id=chr3:18480217..18480239,- | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_3_at_SATB1_5end | |description=CAGE_peak_3_at_SATB1_5end | ||
Latest revision as of 03:13, 17 September 2015
| Short description: | p3@SATB1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SATB1_5end |
| Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
| Association with transcript: | 0bp_to_ENST00000487699_5end |
| EntrezGene: | SATB1 |
| HGNC: | 10541 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SATB1 |
|---|
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125
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mature alpha-beta T cell | 3.46e-30 | 18 |
| alpha-beta T cell | 3.46e-30 | 18 |
| immature T cell | 3.46e-30 | 18 |
| mature T cell | 3.46e-30 | 18 |
| immature alpha-beta T cell | 3.46e-30 | 18 |
| T cell | 4.18e-26 | 25 |
| pro-T cell | 4.18e-26 | 25 |
| CD8-positive, alpha-beta T cell | 2.55e-21 | 11 |
| lymphoid lineage restricted progenitor cell | 5.95e-18 | 52 |
| lymphocyte | 1.78e-17 | 53 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| neocortex | 1.84e-19 | 20 |
| regional part of cerebral cortex | 2.14e-17 | 22 |
| blood | 2.88e-17 | 15 |
| haemolymphatic fluid | 2.88e-17 | 15 |
| organism substance | 2.88e-17 | 15 |
| cerebral cortex | 6.69e-15 | 25 |
| pallium | 6.69e-15 | 25 |
| cerebral hemisphere | 5.03e-14 | 32 |
| telencephalon | 5.90e-13 | 34 |
| regional part of telencephalon | 2.21e-12 | 32 |
Showing 1 to 10 of 21 entries
