FFCP PHASE1:Hg19::chr4:1976361..1976365,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677770 | |EntrezGene=677770 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32580 | |HGNC=32580 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000503991,ENST00000516197,NR_003004,uc003gej.2_5end | |association_with_transcript=0bp_to_ENST00000503991,ENST00000516197,NR_003004,uc003gej.2_5end | ||
|cluster_id=chr4:1976361..1976365,+ | |||
|coexpression_cluster_id=C229 | |||
|description=CAGE_peak_1_at_SCARNA22_5end | |description=CAGE_peak_1_at_SCARNA22_5end | ||
|id=chr4:1976361..1976365,+ | |id=chr4:1976361..1976365,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002127;1.18e-13;1!CL:0000911;1.18e-13;1!CL:0000814;1.18e-13;1!CL:0000333;5.70e-11;5!CL:0000123;1.81e-07;2!CL:0002535;1.81e-07;2!CL:0000242;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,2.07e-13,1;CL:0000914,2.07e-13,1;CL:0000911,2.07e-13,1;CL:0000814,2.07e-13,1;CL:0002042,2.07e-13,1;CL:0002039,2.07e-13,1;CL:0002040,2.07e-13,1;CL:0002041,2.07e-13,1;CL:0000242,1.54e-07,2;CL:0002535,1.75e-07,2;CL:0000893,2.40e-07,2;CL:0002489,2.40e-07,2;CL:0000809,2.40e-07,2;CL:0000808,2.40e-07,2;CL:0000894,2.40e-07,2;CL:0000806,2.40e-07,2;CL:0000807,2.40e-07,2;CL:0000805,2.40e-07,2;CL:0002425,2.40e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002425;1.81e-07;2 | |||
|ontology_enrichment_disease=DOID:162!1.01e-13!235;DOID:14566!8.14e-13!239;DOID:0050687!6.89e-11!143;DOID:305!3.58e-08!106;DOID:0050686!7.38e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:1799;4.53e-14;1!DOID:10165;4.53e-14;1!DOID:1798;4.53e-14;1!DOID:169;2.72e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.50e-14,1;DOID:10165,3.50e-14,1;DOID:1798,3.50e-14,1;DOID:169,2.66e-09,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;5.70e-11;5!UBERON:0002410;5.70e-11;5!UBERON:0006955;1.81e-07;2!UBERON:0004801;1.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,5.57e-11,5;UBERON:0002410,5.57e-11,5;UBERON:0006955,1.75e-07,2;UBERON:0004801,1.75e-07,2 | |||
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| ||
|short_description=p1@SCARNA22 | |short_description=p1@SCARNA22 | ||
}} | }} |
Latest revision as of 07:10, 17 September 2015
Short description: | p1@SCARNA22 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCARNA22_5end |
Coexpression cluster: | C229_Mesenchymal_CD4_Melanocyte_acute_skeletal_left_heart |
Association with transcript: | 0bp_to_ENST00000503991, ENST00000516197, NR_003004, uc003gej.2_5end |
EntrezGene: | SCARNA22 |
HGNC: | 32580 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 2.07e-13 | 1 |
immature NK T cell | 2.07e-13 | 1 |
effector T cell | 2.07e-13 | 1 |
mature NK T cell | 2.07e-13 | 1 |
immature NK T cell stage IV | 2.07e-13 | 1 |
immature NK T cell stage I | 2.07e-13 | 1 |
immature NK T cell stage II | 2.07e-13 | 1 |
immature NK T cell stage III | 2.07e-13 | 1 |
Merkel cell | 1.54e-07 | 2 |
epithelial cell of cervix | 1.75e-07 | 2 |
thymocyte | 2.40e-07 | 2 |
double negative thymocyte | 2.40e-07 | 2 |
double-positive, alpha-beta thymocyte | 2.40e-07 | 2 |
DN4 thymocyte | 2.40e-07 | 2 |
DN1 thymic pro-T cell | 2.40e-07 | 2 |
DN2 thymocyte | 2.40e-07 | 2 |
DN3 thymocyte | 2.40e-07 | 2 |
immature single positive thymocyte | 2.40e-07 | 2 |
early T lineage precursor | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 5.57e-11 | 5 |
autonomic nervous system | 5.57e-11 | 5 |
uterine epithelium | 1.75e-07 | 2 |
cervix epithelium | 1.75e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.50e-14 | 1 |
endocrine pancreas cancer | 3.50e-14 | 1 |
pancreatic endocrine carcinoma | 3.50e-14 | 1 |
neuroendocrine tumor | 2.66e-09 | 6 |