FFCP PHASE1:Hg19::chr16:67694948..67694960,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:67694948..67694960,+
|short_description=p4@PARD6A
|description=CAGE_peak_4_at_PARD6A_5end
|association_with_transcript=-174bp_to_uc002etu.2_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50855 | |EntrezGene=50855 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15943 | |HGNC=15943 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-174bp_to_uc002etu.2_5end | |||
|cluster_id=chr16:67694948..67694960,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_PARD6A_5end | |||
|id=chr16:67694948..67694960,+ | |||
|ontology_enrichment_celltype=CL:0000624!7.08e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000047;6.67e-09;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.20e-47;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.27e-16!57;UBERON:0005068!1.27e-16!57;UBERON:0006241!1.27e-16!57;UBERON:0007135!1.27e-16!57;UBERON:0001017!5.26e-16!82;UBERON:0005743!1.91e-15!86;UBERON:0000073!1.71e-14!94;UBERON:0001016!1.71e-14!94;UBERON:0002616!1.80e-13!59;UBERON:0000955!6.66e-13!69;UBERON:0006238!6.66e-13!69;UBERON:0002619!8.71e-11!22;UBERON:0002780!5.12e-10!41;UBERON:0001890!5.12e-10!41;UBERON:0006240!5.12e-10!41;UBERON:0007023!9.07e-10!115;UBERON:0003080!1.25e-09!42;UBERON:0002020!1.59e-09!34;UBERON:0003528!1.59e-09!34;UBERON:0001893!2.10e-09!34;UBERON:0003076!3.74e-09!15;UBERON:0003057!3.74e-09!15;UBERON:0001869!4.04e-09!32;UBERON:0003075!4.35e-09!86;UBERON:0007284!4.35e-09!86;UBERON:0000956!5.35e-09!25;UBERON:0000203!5.35e-09!25;UBERON:0001950!6.76e-09!20;UBERON:0002346!7.01e-09!90;UBERON:0002791!7.48e-09!33;UBERON:0004733!2.70e-08!12;UBERON:0002028!2.70e-08!12;UBERON:0007277!2.70e-08!12;UBERON:0004732!1.79e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;8.68e-28;9!UBERON:0001895;8.68e-28;9!UBERON:0002037;5.10e-24;6!UBERON:0004733;5.97e-21;12!UBERON:0002028;5.97e-21;12!UBERON:0004732;2.27e-19;13!UBERON:0002360;6.67e-09;2!UBERON:0000094;6.67e-09;2!UBERON:0010743;6.67e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,7.07e-28,9;UBERON:0001895,7.07e-28,9;UBERON:0010092,7.07e-28,9;UBERON:0002037,5.31e-24,6;UBERON:0006215,5.31e-24,6;UBERON:0004733,5.12e-21,12;UBERON:0002028,5.12e-21,12;UBERON:0007277,5.12e-21,12;UBERON:0004732,1.97e-19,13;UBERON:0003076,6.85e-17,15;UBERON:0003057,6.85e-17,15;UBERON:0002360,8.09e-09,2;UBERON:0000094,8.09e-09,2;UBERON:0010743,8.09e-09,2;UBERON:0001017,1.26e-08,81;UBERON:0001016,9.89e-08,89;UBERON:0000073,3.43e-07,53;UBERON:0002616,3.43e-07,53;UBERON:0001049,8.27e-07,56;UBERON:0005068,8.27e-07,56;UBERON:0006241,8.27e-07,56;UBERON:0007135,8.27e-07,56 | |||
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| ||
|short_description=p4@PARD6A | |||
}} | }} |
Latest revision as of 12:00, 17 September 2015
Short description: | p4@PARD6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PARD6A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -174bp_to_uc002etu.2_5end |
EntrezGene: | PARD6A |
HGNC: | 15943 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 7.07e-28 | 9 |
metencephalon | 7.07e-28 | 9 |
future metencephalon | 7.07e-28 | 9 |
cerebellum | 5.31e-24 | 6 |
rhombic lip | 5.31e-24 | 6 |
segmental subdivision of hindbrain | 5.12e-21 | 12 |
hindbrain | 5.12e-21 | 12 |
presumptive hindbrain | 5.12e-21 | 12 |
segmental subdivision of nervous system | 1.97e-19 | 13 |
posterior neural tube | 6.85e-17 | 15 |
chordal neural plate | 6.85e-17 | 15 |
meninx | 8.09e-09 | 2 |
membrane organ | 8.09e-09 | 2 |
meningeal cluster | 8.09e-09 | 2 |
central nervous system | 1.26e-08 | 81 |
nervous system | 9.89e-08 | 89 |
regional part of nervous system | 3.43e-07 | 53 |
regional part of brain | 3.43e-07 | 53 |
neural tube | 8.27e-07 | 56 |
neural rod | 8.27e-07 | 56 |
future spinal cord | 8.27e-07 | 56 |
neural keel | 8.27e-07 | 56 |