FFCP PHASE1:Hg19::chr20:62152108..62152136,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:62152108..62152136,+
|short_description=p1@PPDPF
|description=CAGE_peak_1_at_PPDPF_5end
|association_with_transcript=0bp_to_ENST00000370177,ENST0000037017...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79144 | |EntrezGene=79144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16142 | |HGNC=16142 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H3Y8 | |UniProt=Q9H3Y8 | ||
|association_with_transcript=0bp_to_ENST00000370177,ENST00000370178,ENST00000464438,ENST00000473620,NM_024299,uc002yff.2_5end | |||
|cluster_id=chr20:62152108..62152136,+ | |||
|coexpression_cluster_id=C1484 | |||
|description=CAGE_peak_1_at_PPDPF_5end | |||
|id=chr20:62152108..62152136,+ | |||
|ontology_enrichment_celltype=CL:0000220!2.93e-14!246;CL:0002321!1.12e-13!248;CL:0000183!5.92e-13!59;CL:0000222!8.68e-13!119;CL:0000192!5.32e-12!42;CL:0000514!5.32e-12!42;CL:0000680!6.99e-12!57;CL:0000056!6.99e-12!57;CL:0000355!6.99e-12!57;CL:0000187!1.07e-11!54;CL:0000055!1.82e-11!180;CL:0000359!3.68e-10!32;CL:0000066!2.38e-09!254;CL:0000393!5.66e-09!60;CL:0000211!5.66e-09!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.32e-09;32!CL:0000192;2.94e-09;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.75e-14,250;CL:0000222,5.50e-13,121;CL:0000192,1.99e-12,43;CL:0000514,1.99e-12,43;CL:0000680,2.77e-12,58;CL:0000056,2.77e-12,58;CL:0000355,2.77e-12,58;CL:0000187,4.20e-12,55;CL:0000359,3.68e-10,32;CL:0000393,2.47e-09,61;CL:0000211,2.47e-09,61;CL:0000066,4.20e-09,253 | |||
|ontology_enrichment_development_v019=CL:0000514;2.94e-09;43!CL:0000355;9.98e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!6.33e-15!216;UBERON:0003104!3.85e-14!238;UBERON:0009142!3.85e-14!238;UBERON:0000475!5.99e-14!365;UBERON:0005256!5.90e-13!143;UBERON:0001134!7.25e-13!61;UBERON:0002036!7.25e-13!61;UBERON:0003082!7.25e-13!61;UBERON:0002385!8.87e-13!63;UBERON:0001015!8.87e-13!63;UBERON:0000383!8.87e-13!63;UBERON:0000486!4.67e-12!82;UBERON:0000490!4.95e-12!138;UBERON:0004290!7.94e-12!70;UBERON:0000119!8.97e-12!312;UBERON:0000481!1.62e-11!347;UBERON:0000914!2.09e-11!83;UBERON:0002329!2.09e-11!83;UBERON:0003077!2.09e-11!83;UBERON:0003059!2.09e-11!83;UBERON:0007282!2.09e-11!83;UBERON:0009618!2.09e-11!83;UBERON:0007285!2.09e-11!83;UBERON:0000483!2.21e-11!309;UBERON:0001637!3.68e-09!42;UBERON:0003509!3.68e-09!42;UBERON:0004572!3.68e-09!42;UBERON:0004872!6.92e-09!84;UBERON:0002049!7.94e-09!79;UBERON:0007798!7.94e-09!79;UBERON:0001981!8.51e-09!60;UBERON:0007500!8.51e-09!60;UBERON:0004537!8.51e-09!60;UBERON:0006965!8.51e-09!60;UBERON:0003914!1.16e-08!118;UBERON:0000468!1.83e-08!659;UBERON:0000915!4.52e-08!52;UBERON:0000055!1.36e-07!69;UBERON:0003102!2.28e-07!95;UBERON:0000467!2.80e-07!625;UBERON:0000480!5.16e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.27e-14,199;UBERON:0001134,2.85e-13,62;UBERON:0002036,2.85e-13,62;UBERON:0003082,2.85e-13,62;UBERON:0002385,3.51e-13,64;UBERON:0001015,3.51e-13,64;UBERON:0000383,3.51e-13,64;UBERON:0007503,3.74e-13,78;UBERON:0000119,1.64e-12,309;UBERON:0000486,1.99e-12,83;UBERON:0007524,3.12e-12,73;UBERON:0002329,3.28e-12,71;UBERON:0003059,3.28e-12,71;UBERON:0007282,3.28e-12,71;UBERON:0004290,3.28e-12,71;UBERON:0009618,3.28e-12,71;UBERON:0000483,4.14e-12,306;UBERON:0000490,4.85e-12,148;UBERON:0003077,5.85e-12,72;UBERON:0007285,5.85e-12,72;UBERON:0003104,6.74e-12,160;UBERON:0009142,6.74e-12,160;UBERON:0005256,3.00e-11,122;UBERON:0001637,3.68e-09,42;UBERON:0003509,3.68e-09,42;UBERON:0004572,3.68e-09,42;UBERON:0004872,9.92e-09,83;UBERON:0002049,1.14e-08,78;UBERON:0007798,1.14e-08,78;UBERON:0007500,1.23e-08,59;UBERON:0001981,1.23e-08,59;UBERON:0004537,1.23e-08,59;UBERON:0006965,1.23e-08,59;UBERON:0003914,2.26e-08,117;UBERON:0000915,5.08e-08,52;UBERON:0003102,8.51e-08,99;UBERON:0000055,1.94e-07,68 | |||
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| ||
|short_description=p1@PPDPF | |||
}} | }} |
Latest revision as of 13:04, 17 September 2015
Short description: | p1@PPDPF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPDPF_5end |
Coexpression cluster: | C1484_Mesenchymal_MCF7_Smooth_Fibroblast_breast_Small_Corneal |
Association with transcript: | 0bp_to_ENST00000370177, ENST00000370178, ENST00000464438, ENST00000473620, NM_024299, uc002yff.2_5end |
EntrezGene: | PPDPF |
HGNC: | 16142 |
UniProt: | Q9H3Y8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.75e-14 | 250 |
mesodermal cell | 5.50e-13 | 121 |
smooth muscle cell | 1.99e-12 | 43 |
smooth muscle myoblast | 1.99e-12 | 43 |
muscle precursor cell | 2.77e-12 | 58 |
myoblast | 2.77e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.77e-12 | 58 |
muscle cell | 4.20e-12 | 55 |
vascular associated smooth muscle cell | 3.68e-10 | 32 |
electrically responsive cell | 2.47e-09 | 61 |
electrically active cell | 2.47e-09 | 61 |
epithelial cell | 4.20e-09 | 253 |