FFCP PHASE1:Hg19::chr4:40477740..40477760,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt=D6RA49 | |UniProt=D6RA49 | ||
|association_with_transcript=5bp_to_ENST00000507180_5end | |association_with_transcript=5bp_to_ENST00000507180_5end | ||
|cluster_id=chr4:40477740..40477760,- | |||
|coexpression_cluster_id=C579 | |||
|description=CAGE_peak_19_at_RBM47_5end | |description=CAGE_peak_19_at_RBM47_5end | ||
|id=chr4:40477740..40477760,- | |id=chr4:40477740..40477760,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.61e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.42e-11,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.79e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!5.99e-09!2;UBERON:0002757!5.99e-09!2;UBERON:0010134!5.99e-09!2;UBERON:0002784!5.99e-09!2;UBERON:0005408!5.99e-09!2;UBERON:0001899!5.99e-09!2;UBERON:0000160!1.94e-08!27;UBERON:0002368!4.08e-08!35;UBERON:0002107!1.09e-07!19;UBERON:0006925!1.09e-07!19;UBERON:0008836!1.09e-07!19;UBERON:0000949!2.17e-07!45;UBERON:0004921!4.14e-07!129;UBERON:0004185!4.14e-07!129;UBERON:0005172!5.39e-07!55;UBERON:0005173!5.39e-07!55 | |ontology_enrichment_uberon=UBERON:0001905!5.99e-09!2;UBERON:0002757!5.99e-09!2;UBERON:0010134!5.99e-09!2;UBERON:0002784!5.99e-09!2;UBERON:0005408!5.99e-09!2;UBERON:0001899!5.99e-09!2;UBERON:0000160!1.94e-08!27;UBERON:0002368!4.08e-08!35;UBERON:0002107!1.09e-07!19;UBERON:0006925!1.09e-07!19;UBERON:0008836!1.09e-07!19;UBERON:0000949!2.17e-07!45;UBERON:0004921!4.14e-07!129;UBERON:0004185!4.14e-07!129;UBERON:0005172!5.39e-07!55;UBERON:0005173!5.39e-07!55 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.79e-16;17!UBERON:0002108;5.76e-16;4!UBERON:0002107;1.37e-15;19!UBERON:0006925;1.37e-15;19!UBERON:0005409;8.52e-13;22!UBERON:0002423;9.71e-12;25!UBERON:0002365;2.03e-09;31!UBERON:0002330;2.03e-09;31!UBERON:0002368;4.28e-08;33!UBERON:0004921;8.37e-08;33!UBERON:0005172;3.54e-07;52!UBERON:0005173;3.54e-07;52!UBERON:0001007;3.56e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.91e-16,17;UBERON:0002108,5.48e-16,4;UBERON:0002107,1.24e-15,19;UBERON:0006925,1.24e-15,19;UBERON:0008836,1.24e-15,19;UBERON:0008835,1.93e-13,22;UBERON:0003894,1.93e-13,22;UBERON:0009854,7.75e-13,23;UBERON:0007499,8.99e-12,25;UBERON:0009497,8.99e-12,25;UBERON:0000015,8.99e-12,25;UBERON:0002423,8.99e-12,25;UBERON:0006235,8.99e-12,25;UBERON:0004161,8.99e-12,25;UBERON:0009856,2.66e-11,26;UBERON:0005409,3.03e-11,25;UBERON:0002365,2.12e-09,31;UBERON:0002330,2.12e-09,31;UBERON:0005172,6.87e-09,54;UBERON:0005173,6.87e-09,54;UBERON:0000949,2.09e-08,45;UBERON:0002368,2.87e-08,35;UBERON:0004921,3.59e-08,118;UBERON:0002417,6.77e-08,60;UBERON:0000916,6.77e-08,60;UBERON:0003929,6.85e-07,54 | |||
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| ||
|short_description=p19@RBM47 | |short_description=p19@RBM47 | ||
}} | }} |
Latest revision as of 18:38, 17 September 2015
Short description: | p19@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_RBM47_5end |
Coexpression cluster: | C579_small_argyrophil_colon_duodenum_signet_temporal_Intestinal |
Association with transcript: | 5bp_to_ENST00000507180_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | D6RA49 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.42e-11 | 12 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.91e-16 | 17 |
small intestine | 5.48e-16 | 4 |
liver | 1.24e-15 | 19 |
digestive gland | 1.24e-15 | 19 |
liver bud | 1.24e-15 | 19 |
hepatic diverticulum | 1.93e-13 | 22 |
liver primordium | 1.93e-13 | 22 |
digestive tract diverticulum | 7.75e-13 | 23 |
epithelial sac | 8.99e-12 | 25 |
epithelium of foregut-midgut junction | 8.99e-12 | 25 |
anatomical boundary | 8.99e-12 | 25 |
hepatobiliary system | 8.99e-12 | 25 |
foregut-midgut junction | 8.99e-12 | 25 |
septum transversum | 8.99e-12 | 25 |
sac | 2.66e-11 | 26 |
gastrointestinal system | 3.03e-11 | 25 |
exocrine gland | 2.12e-09 | 31 |
exocrine system | 2.12e-09 | 31 |
abdomen element | 6.87e-09 | 54 |
abdominal segment element | 6.87e-09 | 54 |
endocrine system | 2.09e-08 | 45 |
endocrine gland | 2.87e-08 | 35 |
subdivision of digestive tract | 3.59e-08 | 118 |
abdominal segment of trunk | 6.77e-08 | 60 |
abdomen | 6.77e-08 | 60 |
gut epithelium | 6.85e-07 | 54 |