FFCP PHASE1:Hg19::chr17:76870102..76870114,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7077 | |EntrezGene=7077 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11821 | |HGNC=11821 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=56bp_to_uc002jwe.2_5end | |association_with_transcript=56bp_to_uc002jwe.2_5end | ||
|cluster_id=chr17:76870102..76870114,- | |||
|coexpression_cluster_id=C177 | |coexpression_cluster_id=C177 | ||
|description=CAGE_peak_35_at_TIMP2_5end | |description=CAGE_peak_35_at_TIMP2_5end | ||
|id=chr17:76870102..76870114,- | |id=chr17:76870102..76870114,- | ||
|ontology_enrichment_celltype=CL:0000148!6.43e-12!10;CL:0000541!6.43e-12!10;CL:0000147!2.02e-08!14;CL:0002567!1.34e-07!3 | |ontology_enrichment_celltype=CL:0000148!6.43e-12!10;CL:0000541!6.43e-12!10;CL:0000147!2.02e-08!14;CL:0002567!1.34e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002567;1.52e-44;3!CL:0000148;3.47e-14;10!CL:0000147;1.99e-10;14!CL:0000710;1.38e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.91e-44,3;CL:0000148,3.71e-14,10;CL:0000541,3.71e-14,10;CL:0000147,2.08e-10,14;CL:0000710,1.42e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.59e-12;3!UBERON:0003057;2.59e-12;3 | |||
|ontology_enrichment_disease=DOID:1909!1.09e-10!2 | |ontology_enrichment_disease=DOID:1909!1.09e-10!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;5.48e-18;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.48e-18,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!7.03e-52!57;UBERON:0005068!7.03e-52!57;UBERON:0006241!7.03e-52!57;UBERON:0007135!7.03e-52!57;UBERON:0005743!2.43e-40!86;UBERON:0001017!1.29e-39!82;UBERON:0000073!1.36e-38!94;UBERON:0001016!1.36e-38!94;UBERON:0002616!1.62e-38!59;UBERON:0003075!6.36e-38!86;UBERON:0007284!6.36e-38!86;UBERON:0002346!5.77e-36!90;UBERON:0000955!1.22e-34!69;UBERON:0006238!1.22e-34!69;UBERON:0007023!7.70e-34!115;UBERON:0002780!4.60e-31!41;UBERON:0001890!4.60e-31!41;UBERON:0006240!4.60e-31!41;UBERON:0003080!3.04e-30!42;UBERON:0001893!6.57e-26!34;UBERON:0002020!1.01e-25!34;UBERON:0003528!1.01e-25!34;UBERON:0003076!5.42e-24!15;UBERON:0003057!5.42e-24!15;UBERON:0002791!4.13e-23!33;UBERON:0003056!4.47e-22!61;UBERON:0004121!5.83e-22!169;UBERON:0000924!2.69e-21!173;UBERON:0006601!2.69e-21!173;UBERON:0002298!1.70e-20!8;UBERON:0000033!1.80e-20!123;UBERON:0001869!2.25e-20!32;UBERON:0000153!3.00e-19!129;UBERON:0007811!3.00e-19!129;UBERON:0002308!5.68e-18!9;UBERON:0000125!5.68e-18!9;UBERON:0001950!9.26e-16!20;UBERON:0002240!4.13e-15!3;UBERON:0000988!1.01e-14!3;UBERON:0006331!1.60e-14!3;UBERON:0002619!2.96e-14!22;UBERON:0004733!1.49e-13!12;UBERON:0002028!1.49e-13!12;UBERON:0007277!1.49e-13!12;UBERON:0000200!1.82e-12!6;UBERON:0004732!1.83e-12!13;UBERON:0000956!1.97e-12!25;UBERON:0000203!1.97e-12!25;UBERON:0000025!4.42e-11!194;UBERON:0000369!5.52e-11!4;UBERON:0002435!5.52e-11!4;UBERON:0000204!5.52e-11!4;UBERON:0010082!5.52e-11!4;UBERON:0009663!9.11e-11!7;UBERON:0001873!2.31e-10!2;UBERON:0010122!2.31e-10!2;UBERON:0002148!3.06e-10!2;UBERON:0009662!3.06e-10!2;UBERON:0001897!4.43e-10!2;UBERON:0005174!3.02e-09!5;UBERON:0001137!3.02e-09!5;UBERON:0002680!1.43e-08!9;UBERON:0001895!1.43e-08!9;UBERON:0010092!1.43e-08!9;UBERON:0002420!2.17e-08!9;UBERON:0007245!2.17e-08!9;UBERON:0010009!2.17e-08!9;UBERON:0010011!2.17e-08!9;UBERON:0000454!2.17e-08!9;UBERON:0004111!8.83e-08!241;UBERON:0000483!1.90e-07!309;UBERON:0000119!2.59e-07!312;UBERON:0005383!3.54e-07!3;UBERON:0005382!3.54e-07!3;UBERON:0001896!4.01e-07!3;UBERON:0005290!4.01e-07!3;UBERON:0010096!4.01e-07!3;UBERON:0002771!8.05e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!7.03e-52!57;UBERON:0005068!7.03e-52!57;UBERON:0006241!7.03e-52!57;UBERON:0007135!7.03e-52!57;UBERON:0005743!2.43e-40!86;UBERON:0001017!1.29e-39!82;UBERON:0000073!1.36e-38!94;UBERON:0001016!1.36e-38!94;UBERON:0002616!1.62e-38!59;UBERON:0003075!6.36e-38!86;UBERON:0007284!6.36e-38!86;UBERON:0002346!5.77e-36!90;UBERON:0000955!1.22e-34!69;UBERON:0006238!1.22e-34!69;UBERON:0007023!7.70e-34!115;UBERON:0002780!4.60e-31!41;UBERON:0001890!4.60e-31!41;UBERON:0006240!4.60e-31!41;UBERON:0003080!3.04e-30!42;UBERON:0001893!6.57e-26!34;UBERON:0002020!1.01e-25!34;UBERON:0003528!1.01e-25!34;UBERON:0003076!5.42e-24!15;UBERON:0003057!5.42e-24!15;UBERON:0002791!4.13e-23!33;UBERON:0003056!4.47e-22!61;UBERON:0004121!5.83e-22!169;UBERON:0000924!2.69e-21!173;UBERON:0006601!2.69e-21!173;UBERON:0002298!1.70e-20!8;UBERON:0000033!1.80e-20!123;UBERON:0001869!2.25e-20!32;UBERON:0000153!3.00e-19!129;UBERON:0007811!3.00e-19!129;UBERON:0002308!5.68e-18!9;UBERON:0000125!5.68e-18!9;UBERON:0001950!9.26e-16!20;UBERON:0002240!4.13e-15!3;UBERON:0000988!1.01e-14!3;UBERON:0006331!1.60e-14!3;UBERON:0002619!2.96e-14!22;UBERON:0004733!1.49e-13!12;UBERON:0002028!1.49e-13!12;UBERON:0007277!1.49e-13!12;UBERON:0000200!1.82e-12!6;UBERON:0004732!1.83e-12!13;UBERON:0000956!1.97e-12!25;UBERON:0000203!1.97e-12!25;UBERON:0000025!4.42e-11!194;UBERON:0000369!5.52e-11!4;UBERON:0002435!5.52e-11!4;UBERON:0000204!5.52e-11!4;UBERON:0010082!5.52e-11!4;UBERON:0009663!9.11e-11!7;UBERON:0001873!2.31e-10!2;UBERON:0010122!2.31e-10!2;UBERON:0002148!3.06e-10!2;UBERON:0009662!3.06e-10!2;UBERON:0001897!4.43e-10!2;UBERON:0005174!3.02e-09!5;UBERON:0001137!3.02e-09!5;UBERON:0002680!1.43e-08!9;UBERON:0001895!1.43e-08!9;UBERON:0010092!1.43e-08!9;UBERON:0002420!2.17e-08!9;UBERON:0007245!2.17e-08!9;UBERON:0010009!2.17e-08!9;UBERON:0010011!2.17e-08!9;UBERON:0000454!2.17e-08!9;UBERON:0004111!8.83e-08!241;UBERON:0000483!1.90e-07!309;UBERON:0000119!2.59e-07!312;UBERON:0005383!3.54e-07!3;UBERON:0005382!3.54e-07!3;UBERON:0001896!4.01e-07!3;UBERON:0005290!4.01e-07!3;UBERON:0010096!4.01e-07!3;UBERON:0002771!8.05e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002336;5.05e-34;1!UBERON:0011215;5.05e-34;1!UBERON:0001018;5.05e-34;1!UBERON:0002473;5.05e-34;1!UBERON:0005340;5.05e-34;1!UBERON:0003544;5.05e-34;1!UBERON:0005970;5.05e-34;1!UBERON:0002316;5.05e-34;1!UBERON:0001020;5.05e-34;1!UBERON:0002437;5.05e-34;1!UBERON:0005162;9.07e-18;2!UBERON:0000122;9.07e-18;2!UBERON:0001896;2.59e-12;3!UBERON:0002240;2.59e-12;3!UBERON:0005174;2.59e-12;3!UBERON:0005290;2.59e-12;3!UBERON:0001137;2.59e-12;3!UBERON:0002298;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002336,9.85e-34,1;UBERON:0011215,9.85e-34,1;UBERON:0001018,9.85e-34,1;UBERON:0002473,9.85e-34,1;UBERON:0005340,9.85e-34,1;UBERON:0003544,9.85e-34,1;UBERON:0005970,9.85e-34,1;UBERON:0002316,9.85e-34,1;UBERON:0001020,9.85e-34,1;UBERON:0002437,9.85e-34,1;UBERON:0005162,1.27e-17,2;UBERON:0000122,1.27e-17,2;UBERON:0001896,2.07e-12,3;UBERON:0005290,2.07e-12,3;UBERON:0010096,2.07e-12,3;UBERON:0002240,2.31e-12,3;UBERON:0005174,2.31e-12,3;UBERON:0001137,2.31e-12,3;UBERON:0003076,7.41e-10,15;UBERON:0003057,7.41e-10,15;UBERON:0002298,7.58e-07,6 | |||
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|short_description=p35@TIMP2 | |short_description=p35@TIMP2 | ||
}} | }} |
Latest revision as of 23:24, 17 September 2015
Short description: | p35@TIMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_TIMP2_5end |
Coexpression cluster: | C177_melanoma_Melanocyte_mesenchymal_retina_Mallassezderived_Gingival_squamous |
Association with transcript: | 56bp_to_uc002jwe.2_5end |
EntrezGene: | TIMP2 |
HGNC: | 11821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.91e-44 | 3 |
melanocyte | 3.71e-14 | 10 |
melanoblast | 3.71e-14 | 10 |
pigment cell | 2.08e-10 | 14 |
neurecto-epithelial cell | 1.42e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
corpus callosum | 9.85e-34 | 1 |
central nervous system cell part cluster | 9.85e-34 | 1 |
axon tract | 9.85e-34 | 1 |
intercerebral commissure | 9.85e-34 | 1 |
dorsal telencephalic commissure | 9.85e-34 | 1 |
brain white matter | 9.85e-34 | 1 |
brain commissure | 9.85e-34 | 1 |
white matter | 9.85e-34 | 1 |
nervous system commissure | 9.85e-34 | 1 |
cerebral hemisphere white matter | 9.85e-34 | 1 |
multi cell component structure | 1.27e-17 | 2 |
neuron projection bundle | 1.27e-17 | 2 |
medulla oblongata | 2.07e-12 | 3 |
myelencephalon | 2.07e-12 | 3 |
future myelencephalon | 2.07e-12 | 3 |
spinal cord | 2.31e-12 | 3 |
dorsal region element | 2.31e-12 | 3 |
dorsum | 2.31e-12 | 3 |
posterior neural tube | 7.41e-10 | 15 |
chordal neural plate | 7.41e-10 | 15 |
brainstem | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
melanoma | 5.48e-18 | 2 |