FFCP PHASE1:Hg19::chr8:32579341..32579372,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3084 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7997 | |||
|TSSclassifier=strong | |||
|UniProt=E5RIG8,B7Z1E3,B7Z1D7 | |||
|association_with_transcript=0bp_to_ENST00000519240,ENST00000539990,NM_001159996,uc011lbg.1,uc011lbh.1_5end | |||
|cluster_id=chr8:32579341..32579372,+ | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_2_at_NRG1_5end | |||
|id=chr8:32579341..32579372,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.61e-24!180;CL:0000057!7.93e-14!75;CL:0000359!6.98e-10!32;CL:0002334!5.85e-09!12;CL:0002620!2.56e-08!23;CL:0002539!6.46e-08!10;CL:0000077!6.57e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.62e-14;23!CL:0000359;8.02e-10;32!CL:1000306;1.48e-08;4!CL:0002547;1.48e-08;4!CL:0002580;1.57e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.30e-16,76;CL:0002620,2.20e-14,23;CL:0000359,2.39e-10,32;CL:1000306,1.19e-08,4;CL:0002547,1.19e-08,4;CL:0002580,1.56e-07,3;CL:0000192,8.97e-07,43;CL:0000514,8.97e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.19e-10;5!DOID:450;9.19e-10;5!DOID:66;9.19e-10;5!DOID:423;9.19e-10;5!DOID:0080000;9.19e-10;5!DOID:11722;9.19e-10;5!DOID:0060072;1.29e-08;4!DOID:0060084;2.71e-07;3!DOID:127;2.71e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.83e-10,5;DOID:450,7.83e-10,5;DOID:66,7.83e-10,5;DOID:423,7.83e-10,5;DOID:0080000,7.83e-10,5;DOID:11722,7.83e-10,5;DOID:0060072,1.40e-08,4;DOID:0060084,2.75e-07,3;DOID:127,2.75e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0001637!8.04e-11!42;UBERON:0003509!8.04e-11!42;UBERON:0004572!8.04e-11!42;UBERON:0004573!9.72e-10!33;UBERON:0004571!9.72e-10!33;UBERON:0004237!6.46e-08!10;UBERON:0004695!6.46e-08!10;UBERON:0002111!6.46e-08!10;UBERON:0004178!6.46e-08!10;UBERON:0003076!6.87e-08!15;UBERON:0003057!6.87e-08!15;UBERON:0001981!9.11e-07!60;UBERON:0007500!9.11e-07!60;UBERON:0004537!9.11e-07!60;UBERON:0006965!9.11e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.73e-10;33!UBERON:0004571;7.73e-10;33!UBERON:0004797;1.48e-08;4!UBERON:0000415;1.48e-08;4!UBERON:0007240;1.48e-08;4!UBERON:0005742;1.48e-08;4!UBERON:0005734;1.48e-08;4!UBERON:0004664;1.48e-08;4!UBERON:0004663;1.48e-08;4!UBERON:0001637;2.12e-08;42!UBERON:0003509;2.12e-08;42!UBERON:0004572;2.12e-08;42!UBERON:0002097;6.22e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.99e-12,42;UBERON:0003509,2.99e-12,42;UBERON:0004572,2.99e-12,42;UBERON:0004573,8.48e-12,33;UBERON:0004571,8.48e-12,33;UBERON:0002097,9.41e-10,41;UBERON:0000415,1.19e-08,4;UBERON:0007240,1.19e-08,4;UBERON:0005742,1.19e-08,4;UBERON:0005734,1.19e-08,4;UBERON:0004664,1.19e-08,4;UBERON:0004663,1.19e-08,4;UBERON:0002199,3.13e-08,46;UBERON:0002416,3.13e-08,46;UBERON:0007500,2.53e-07,59;UBERON:0001981,2.53e-07,59;UBERON:0004537,2.53e-07,59;UBERON:0006965,2.53e-07,59 | |||
|phase1_expression=1.45342703416445,0.856402095563933,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0.602694528023977,0.730310090387373,0,0.123121058076788,0,0,0.572471974262113,2.05311637609326,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,2.3858578411533,2.91980922181582,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,3.97577561356255,9.3706578631789,1.72131935057184,10.3261183469573,8.86670955495893,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0.494533858557114,0,0,0,0,0,3.95079858792754,4.90380473278431,0,0,28.3435624388402,1.2813443329114,1.69545520927649,14.4043726120513,2.57631323096097,5.41045134095821,4.46680455195816,69.0295198866779,24.2618142851385,5.55354303337052,1.56484827691909,0.161646056818812,23.7856426986132,18.4376339756582,7.12154487704048,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0.269662616320329,0,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0.70445216541493,0,0,0.190254152234598,0,0,0,0,0,0,5.87937448696008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0,3.48613383440118,0,0,0,0,0.718874566474748,0,11.4109524032575,1.73737568001095,0.205476322550383,0.895304816199478,0,0,0,0,0.76228387266739,0,0.773288812777695,0.670065061337395,0,0,0,0,0.12269149171914,0,0,0.415941723061614,3.56857977594324,0.946214490203608,1.17141414992713,0.601892199455438,0,0,5.31380478828349,6.26855173041791,0,0,0,0,0,0,0,0,0,25.555104205334,31.920090443917,8.41980283299221,0.640695746278505,30.7024349440022,0.321707842287215,0,0.462629081407967,0.355123450626254,1.56041596426237,0.519254429183621,2.67283870457906,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.178064071293475,0,0,0.127612712494584,0,34.8634161972964,93.8140793555307,20.911118104818,0.308033580176089,3.19383618190213,23.488190786027,2.96518750566272,4.00749682877575,0,0,0,0,0,0,0,0,0,0,4.04364963146632,0,0.421258456238981,0,0,2.11300293513511,0,0.141405431953713,1.13008116620243,1.10273068709225,1.99031692572366,7.0152141640602,0,0,3.24656603140326,0.92947049429925,0,0,0,4.280052617775,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5583653922077,0,162.525875973268,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,1.24415835064723,0.718946809178615,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,4.5774520895125,0.774054819518572,1.18219047581419,0,0,0.83654246567162,0,1.02547850262301,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0.416024019039416,0,0,1.74118413160805,0,26.1418769356857,0,0,0,0,0,0,0.274083849293502,1.19228767021794,0.0633107959558787,0,8.01588202515337,0,0,0,4.81053703896846,0,0,0,0,0.815425236441684,1.569042694685,1.01998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492137407573744,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0.383830394638891,0,0,0,7.05899482279827,15.5559868416228,12.4103196841575,1.19730191562487,0,38.1669168799345,0.113312091520126,0,0,1.93924434542326,0.79339561045614,21.0436810597725,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0.122026264901963,0,1.14681839138014,0.110929051536852,1.36612086471044,0,0.874862855734746,0,0,0,0,0,3.4328604663981,0.233713309847224,0.554805861502613,1.89403005275089,1.50940741051545,0.889811221596536,2.28840068396924,0,0.310874401165561,0,0.159296767163702,0,0,0,1.32920857278997,0.521745061811734,0,0.380805212168795,7.32367319768391,0.545545977607678,0,0,3.18476710958893,0.400027764663154,8.24149692438703,5.38799182025471,2.52369796457302,0.770479321629213,0,0,15.6427088603468,1.15761237161917,0.734210113519403,45.1303879525348,0.308801447160972,0,50.7097848864679,12.3464984493385,0.675769762612291,1.02496607435179,5.87231580943038,0.303859956177382,0,0,0,0,0,492.037363324946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86203915588077,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,56.4445501291407,0.690359926060101,0,0,0.60511520611056,0,0,0,2.80926563812386,0.135075169236789,0,0,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,2.58284985311961,0,0.472775363535873,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,2.12997601315018,2.55640214277473,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,3.73839652313197,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,9.29987545416878,0,3.8936390591141,0,0,0.126698501011437,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0.897054900644907,0.12729431655633,0.202117188958219,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@NRG1 | |||
}} |
Latest revision as of 00:45, 18 September 2015
Short description: | p2@NRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NRG1_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 0bp_to_ENST00000519240, ENST00000539990, NM_001159996, uc011lbg.1, uc011lbh.1_5end |
EntrezGene: | NRG1 |
HGNC: | 7997 |
UniProt: | E5RIG8B7Z1E3B7Z1D7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.30e-16 | 76 |
skin fibroblast | 2.20e-14 | 23 |
vascular associated smooth muscle cell | 2.39e-10 | 32 |
fibroblast of tunica adventitia of artery | 1.19e-08 | 4 |
fibroblast of the aortic adventitia | 1.19e-08 | 4 |
preadipocyte of the breast | 1.56e-07 | 3 |
smooth muscle cell | 8.97e-07 | 43 |
smooth muscle myoblast | 8.97e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
artery | 2.99e-12 | 42 |
arterial blood vessel | 2.99e-12 | 42 |
arterial system | 2.99e-12 | 42 |
systemic artery | 8.48e-12 | 33 |
systemic arterial system | 8.48e-12 | 33 |
skin of body | 9.41e-10 | 41 |
artery wall | 1.19e-08 | 4 |
tunica adventitia of artery | 1.19e-08 | 4 |
adventitia | 1.19e-08 | 4 |
tunica adventitia of blood vessel | 1.19e-08 | 4 |
aorta tunica adventitia | 1.19e-08 | 4 |
aorta wall | 1.19e-08 | 4 |
integument | 3.13e-08 | 46 |
integumental system | 3.13e-08 | 46 |
epithelial tube open at both ends | 2.53e-07 | 59 |
blood vessel | 2.53e-07 | 59 |
blood vasculature | 2.53e-07 | 59 |
vascular cord | 2.53e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.83e-10 | 5 |
myotonic disease | 7.83e-10 | 5 |
muscle tissue disease | 7.83e-10 | 5 |
myopathy | 7.83e-10 | 5 |
muscular disease | 7.83e-10 | 5 |
myotonic dystrophy | 7.83e-10 | 5 |
benign neoplasm | 1.40e-08 | 4 |
cell type benign neoplasm | 2.75e-07 | 3 |
leiomyoma | 2.75e-07 | 3 |