FFCP PHASE1:Hg19::chr17:7760457..7760587,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:7760457..7760587,- to FFCP PHASE1:Hg19::chr17:7760457..7760587,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84316 | |EntrezGene=84316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28212 | |HGNC=28212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=153bp_to_DQ893290,DQ893319,DQ896634_5end | |||
|cluster_id=chr17:7760457..7760587,- | |||
|description=CAGE_peak_1_at_LSMD1_5end | |||
|id=chr17:7760457..7760587,- | |||
|ontology_enrichment_celltype=CL:0000222!8.32e-14!119;CL:0000183!3.09e-13!59;CL:0000187!4.26e-12!54;CL:0000680!1.21e-11!57;CL:0000056!1.21e-11!57;CL:0000355!1.21e-11!57;CL:0000393!1.32e-10!60;CL:0000211!1.32e-10!60;CL:0000192!1.53e-10!42;CL:0000514!1.53e-10!42;CL:0000359!6.66e-10!32;CL:0000055!1.28e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.79e-09;32!CL:0000192;1.67e-07;43!CL:0000187;3.07e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.53e-14,121;CL:0000187,1.22e-11,55;CL:0000680,3.24e-11,58;CL:0000056,3.24e-11,58;CL:0000355,3.24e-11,58;CL:0000393,3.20e-10,61;CL:0000211,3.20e-10,61;CL:0000192,4.68e-10,43;CL:0000514,4.68e-10,43;CL:0000359,6.66e-10,32;CL:0000115,8.29e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000514;1.67e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!1.34e-14!70;UBERON:0000914!2.48e-13!83;UBERON:0002329!2.48e-13!83;UBERON:0003077!2.48e-13!83;UBERON:0003059!2.48e-13!83;UBERON:0007282!2.48e-13!83;UBERON:0009618!2.48e-13!83;UBERON:0007285!2.48e-13!83;UBERON:0000477!7.32e-13!286;UBERON:0000119!1.11e-12!312;UBERON:0000025!1.88e-12!194;UBERON:0000483!2.08e-12!309;UBERON:0002049!5.06e-12!79;UBERON:0007798!5.06e-12!79;UBERON:0001134!6.29e-12!61;UBERON:0002036!6.29e-12!61;UBERON:0003082!6.29e-12!61;UBERON:0000486!9.08e-12!82;UBERON:0001637!2.64e-11!42;UBERON:0003509!2.64e-11!42;UBERON:0004572!2.64e-11!42;UBERON:0000055!2.84e-11!69;UBERON:0001981!3.22e-11!60;UBERON:0007500!3.22e-11!60;UBERON:0004537!3.22e-11!60;UBERON:0006965!3.22e-11!60;UBERON:0002385!3.52e-11!63;UBERON:0001015!3.52e-11!63;UBERON:0000383!3.52e-11!63;UBERON:0004872!4.75e-11!84;UBERON:0004111!1.16e-09!241;UBERON:0003914!8.87e-09!118;UBERON:0004573!3.23e-08!33;UBERON:0004571!3.23e-08!33;UBERON:0001009!3.70e-08!113;UBERON:0005256!3.87e-08!143;UBERON:0000481!5.68e-08!347;UBERON:0004535!8.64e-08!110;UBERON:0000064!1.35e-07!219;UBERON:0000490!1.40e-07!138;UBERON:0000475!1.46e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.80e-08;42!UBERON:0003509;3.80e-08;42!UBERON:0004572;3.80e-08;42!UBERON:0004573;1.75e-07;33!UBERON:0004571;1.75e-07;33!UBERON:0003914;5.17e-07;74!UBERON:0007500;6.24e-07;56!UBERON:0001981;6.24e-07;56!UBERON:0004537;6.24e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.99e-16,78;UBERON:0007524,1.94e-14,73;UBERON:0003077,2.90e-14,72;UBERON:0007285,2.90e-14,72;UBERON:0002329,3.71e-14,71;UBERON:0003059,3.71e-14,71;UBERON:0007282,3.71e-14,71;UBERON:0004290,3.71e-14,71;UBERON:0009618,3.71e-14,71;UBERON:0000119,3.35e-13,309;UBERON:0000483,6.36e-13,306;UBERON:0000025,1.07e-12,192;UBERON:0002049,3.18e-12,78;UBERON:0007798,3.18e-12,78;UBERON:0001134,1.64e-11,62;UBERON:0002036,1.64e-11,62;UBERON:0003082,1.64e-11,62;UBERON:0000055,1.74e-11,68;UBERON:0007500,1.85e-11,59;UBERON:0001981,1.85e-11,59;UBERON:0004537,1.85e-11,59;UBERON:0006965,1.85e-11,59;UBERON:0000486,1.98e-11,83;UBERON:0001637,2.64e-11,42;UBERON:0003509,2.64e-11,42;UBERON:0004572,2.64e-11,42;UBERON:0004872,3.16e-11,83;UBERON:0002385,8.59e-11,64;UBERON:0001015,8.59e-11,64;UBERON:0000383,8.59e-11,64;UBERON:0004111,5.58e-10,240;UBERON:0000490,2.62e-09,148;UBERON:0003914,5.32e-09,117;UBERON:0001009,2.90e-08,112;UBERON:0004573,3.23e-08,33;UBERON:0004571,3.23e-08,33;UBERON:0005256,4.66e-08,122;UBERON:0004535,6.81e-08,109;UBERON:0010314,4.94e-07,132;UBERON:0003104,9.14e-07,160;UBERON:0009142,9.14e-07,160 | |||
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| ||
|short_description=p1@LSMD1 | |||
}} | }} |
Latest revision as of 02:12, 18 September 2015
Short description: | p1@LSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LSMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 153bp_to_DQ893290, DQ893319, DQ896634_5end |
EntrezGene: | LSMD1 |
HGNC: | 28212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.53e-14 | 121 |
muscle cell | 1.22e-11 | 55 |
muscle precursor cell | 3.24e-11 | 58 |
myoblast | 3.24e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.24e-11 | 58 |
electrically responsive cell | 3.20e-10 | 61 |
electrically active cell | 3.20e-10 | 61 |
smooth muscle cell | 4.68e-10 | 43 |
smooth muscle myoblast | 4.68e-10 | 43 |
vascular associated smooth muscle cell | 6.66e-10 | 32 |
endothelial cell | 8.29e-07 | 36 |