FFCP PHASE1:Hg19::chr11:46403194..46403242,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6972 | |||
|TSSclassifier=strong | |||
|UniProt=P21741,Q2LEK4,E7ES97 | |||
|association_with_transcript=0bp_to_ENST00000395566,ENST00000395569,ENST00000405098,ENST00000533283,NM_002391,uc001ncp.2,uc009yla.2,uc009ylb.2_5end | |||
|cluster_id=chr11:46403194..46403242,+ | |||
|description=CAGE_peak_1_at_MDK_5end | |||
|id=chr11:46403194..46403242,+ | |||
|ontology_enrichment_celltype=CL:0002321!3.06e-21!248;CL:0000220!2.10e-20!246;CL:0000066!5.58e-17!254;CL:0000222!1.95e-15!119;CL:0000055!5.97e-13!180;CL:0000393!2.05e-10!60;CL:0000211!2.05e-10!60;CL:0000183!3.50e-10!59;CL:0000187!1.18e-08!54;CL:0000680!3.37e-08!57;CL:0000056!3.37e-08!57;CL:0000355!3.37e-08!57;CL:0000115!4.04e-08!35;CL:0002078!4.91e-08!44;CL:0000213!8.77e-08!57;CL:0000215!8.77e-08!57;CL:0002139!3.18e-07!24;CL:1000497!7.99e-07!18;CL:0002518!7.99e-07!18;CL:1000449!9.23e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.88e-07;24!CL:0000115;8.75e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.44e-21,250;CL:0000066,2.33e-16,253;CL:0000222,7.50e-16,121;CL:0000393,8.42e-11,61;CL:0000211,8.42e-11,61;CL:0000187,5.09e-09,55;CL:0000680,1.50e-08,58;CL:0000056,1.50e-08,58;CL:0000355,1.50e-08,58;CL:0000115,4.03e-08,36;CL:0002078,4.36e-08,45;CL:0000213,8.22e-08,58;CL:0000215,8.22e-08,58;CL:0002139,2.96e-07,24;CL:0000133,9.58e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.94e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.44e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0000490!2.75e-16!138;UBERON:0000119!3.56e-16!312;UBERON:0000483!4.17e-16!309;UBERON:0005256!7.26e-15!143;UBERON:0003914!1.67e-13!118;UBERON:0000481!6.61e-13!347;UBERON:0002049!1.60e-10!79;UBERON:0007798!1.60e-10!79;UBERON:0002100!2.53e-10!216;UBERON:0003104!6.99e-10!238;UBERON:0009142!6.99e-10!238;UBERON:0004111!2.42e-09!241;UBERON:0000475!2.58e-09!365;UBERON:0000477!2.94e-09!286;UBERON:0000468!7.92e-09!659;UBERON:0000055!6.95e-08!69;UBERON:0002385!8.05e-08!63;UBERON:0001015!8.05e-08!63;UBERON:0000383!8.05e-08!63;UBERON:0001134!9.19e-08!61;UBERON:0002036!9.19e-08!61;UBERON:0003082!9.19e-08!61;UBERON:0000922!1.05e-07!612;UBERON:0006554!1.75e-07!44;UBERON:0004872!2.52e-07!84;UBERON:0001008!3.46e-07!45;UBERON:0007625!3.67e-07!11;UBERON:0000486!5.04e-07!82;UBERON:0000025!6.44e-07!194;UBERON:0003064!8.07e-07!37;UBERON:0006555!8.60e-07!17;UBERON:0005103!8.60e-07!17;UBERON:0000083!8.60e-07!17;UBERON:0009201!8.60e-07!17;UBERON:0004819!8.60e-07!17;UBERON:0006553!8.60e-07!17;UBERON:0003074!8.60e-07!17;UBERON:0003060!8.60e-07!17;UBERON:0001456!8.62e-07!21;UBERON:0004211!9.23e-07!16;UBERON:0001285!9.23e-07!16;UBERON:0007684!9.23e-07!16;UBERON:0003220!9.23e-07!16;UBERON:0004208!9.23e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.46e-07;11!UBERON:0001456;7.52e-07;21!UBERON:0000970;9.36e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,8.17e-17,160;UBERON:0009142,8.17e-17,160;UBERON:0000119,1.28e-16,309;UBERON:0000483,1.49e-16,306;UBERON:0000490,3.68e-15,148;UBERON:0003914,2.70e-13,117;UBERON:0005256,1.31e-12,122;UBERON:0002049,1.85e-10,78;UBERON:0007798,1.85e-10,78;UBERON:0002100,5.80e-10,199;UBERON:0004111,3.73e-09,240;UBERON:0007503,1.22e-08,78;UBERON:0002385,3.72e-08,64;UBERON:0001015,3.72e-08,64;UBERON:0000383,3.72e-08,64;UBERON:0001134,4.23e-08,62;UBERON:0002036,4.23e-08,62;UBERON:0003082,4.23e-08,62;UBERON:0006554,6.99e-08,47;UBERON:0000055,8.23e-08,68;UBERON:0001008,1.39e-07,48;UBERON:0000486,2.54e-07,83;UBERON:0004872,2.87e-07,83;UBERON:0007625,3.42e-07,11;UBERON:0007524,8.09e-07,73 | |||
|phase1_expression=2.54349730978779,1.2846031433459,1.40954404095971,4.00293193412522,4.02264984984559,0,2.53299878168311,8.2123583545488,8.88031135879451,49.8839891098063,87.9229471645259,60.9451428243181,95.4836461187002,81.5620266006707,36.1223139543428,58.4922877413045,68.7071761947334,70.8400787675752,60.5036670500229,114.256341895259,125.66442580646,267.690332142287,165.730636548882,132.631317895625,130.564345178595,1.45185470921107,0.738905305049512,1.96776953284198,0,0,3.2511385896376,1.83884244895785,6.6265302131215,6.65557218300218,0,0,39.9296597495392,0,0,0,1.11957737119962,0.32389366601898,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,19.8256992868539,7.8471198817415,15.0128928321794,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,141.407982462098,132.128069361616,65.593494225731,12.2889311810753,23.5628817998868,31.4316946144987,20.6774346233286,25.3050132557371,215.822987585567,201.773751690933,197.364763452454,16.7653216637072,28.4150324868183,10.7527488407485,0.324547393654683,0,0.664789802594326,0,0,0,53.268325174277,33.5491492091389,41.3097196913037,36.7450162250606,70.8954047194741,75.1072254496384,43.052963106583,58.6606043314377,63.6821610209211,57.2372247827586,78.5517168362837,77.5477547832883,218.435541505612,16.1771755352182,119.9010082865,61.2596136028787,81.0551035180473,64.9768242388769,67.4593204849886,36.0720950635889,91.0512667334124,0,0,14.3911037207036,6.46063537203914,22.9201226112889,6.22323149822128,29.257335316379,37.2401801308275,38.6867544098192,19.2148192313469,14.0600502597781,28.9426262921783,21.6884182032198,16.1827284082324,13.319453632754,16.13292588544,71.7023581411418,9.05264222807929,6.27519003698894,6.87463930538285,19.8464302707963,10.5217413839285,12.3596709897979,7.14539599392126,40.6581590301952,13.7423288963768,144.936348588411,126.106133932064,6.37112953356618,37.3681433744444,34.6772394745376,45.1677856737791,4.43302584774693,46.9706054342497,26.3579504387157,97.9552144071011,24.5013515625645,6.99619579186562,47.6232977065405,26.4914876449452,16.8051013807265,28.8547081867629,5.92573242104947,25.870243030091,15.5274225661965,22.0207631664309,6.56327813034698,51.363843442403,41.5430366024347,17.7504796258307,26.0947934409588,37.8120120852387,5.60456474173561,3.81844568827169,4.01526433544605,156.73621237653,148.168280983421,170.107932360975,160.467313163793,188.988317305846,95.6240680778674,10.9514672630871,9.00537313470039,2.76269842704961,18.1103491932472,31.0408177117922,0,0,0,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,73.8155454624648,148.656280231653,134.584701705368,260.205419152409,0,1.96565443335525,2.95394953340702,0.441463099414651,65.0608839893071,128.847425534193,2.85350742062426,1.1240175325762,3.31745608958382,30.0912446765221,112.078057026752,19.758760920312,127.01158098224,332.140610253595,107.428955225777,148.986174089428,157.878059788624,148.207984590752,37.1396067040859,36.0564188079846,0.738651018262192,0.234004265139238,0.445893486866185,0.93733833986777,7.39121364074982,3.82792762554443,1.16426079513703,1.45316969256981,2.30029607499127,0.985326475791887,1.14462964217194,5.59785911960085,3.60299883542404,1.13618190083742,6.3497894292169,3.81988425558278,4.68869788840188,22.2394179829517,3.08482478109971,3.30377363628309,17.4354123904653,13.2314679527526,54.0590485353267,10.8540663015006,62.4382387110067,139.486013882234,21.1325688139,52.1238708506346,26.0018592278415,84.8784335065069,39.7177569665179,69.2697665441858,46.7538039262143,218.13388536736,112.783926138965,10.0978217131058,60.4166312862328,65.7320054534746,29.5410589518394,86.2818124014291,17.3953004656779,2.43247561282381,0.502257091432126,0,17.2529895953939,27.5668646001873,88.4348811252454,4.48822050669496,22.3969191579918,15.5783038018709,0,0,0,0,60.7286151891688,66.3713254673871,59.5432385838825,67.5090549297425,61.8800589103568,0,0,0,166.246971279435,142.048427980948,60.2208352613413,9.98260135347874,9.63516539504674,6.78120384645919,3.63138386477411,9.93122129101472,111.429676987433,42.423959229927,64.4298830579373,61.9480406300123,52.8252375965944,77.733059512708,63.8246768288192,0,0,0.106727557803444,36.0721810021049,91.5394917307734,253.100675516942,0.992431231275107,2.14846762603287,7.85848264412606,3.33161788064823,11.2575594794675,7.39928037260594,4.45254199334973,12.1825658104098,24.1483946425853,13.8794893663337,48.8099163432604,13.2479831444354,113.487023166533,18.0455823272956,41.2522830432816,49.8294705034393,60.6363589462368,105.686278457296,165.59025793702,57.6074721541022,400.018382280196,176.828461830445,91.3021589923375,62.5533612389931,36.4000529291744,69.9567568170932,317.708140541996,168.257737714733,398.341680440754,22.4291120279634,15.7904441696458,188.05479396663,0,0,231.830913105216,233.87444238389,75.4877875621183,4.6368455241475,43.77020418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| |||
|short_description=p1@MDK | |||
}} |
Latest revision as of 02:55, 18 September 2015
Short description: | p1@MDK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395566, ENST00000395569, ENST00000405098, ENST00000533283, NM_002391, uc001ncp.2, uc009yla.2, uc009ylb.2_5end |
EntrezGene: | MDK |
HGNC: | 6972 |
UniProt: | P21741Q2LEK4E7ES97 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.44e-21 | 250 |
epithelial cell | 2.33e-16 | 253 |
mesodermal cell | 7.50e-16 | 121 |
electrically responsive cell | 8.42e-11 | 61 |
electrically active cell | 8.42e-11 | 61 |
muscle cell | 5.09e-09 | 55 |
muscle precursor cell | 1.50e-08 | 58 |
myoblast | 1.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.50e-08 | 58 |
endothelial cell | 4.03e-08 | 36 |
meso-epithelial cell | 4.36e-08 | 45 |
lining cell | 8.22e-08 | 58 |
barrier cell | 8.22e-08 | 58 |
endothelial cell of vascular tree | 2.96e-07 | 24 |
neurectodermal cell | 9.58e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 8.17e-17 | 160 |
entire embryonic mesenchyme | 8.17e-17 | 160 |
cell layer | 1.28e-16 | 309 |
epithelium | 1.49e-16 | 306 |
unilaminar epithelium | 3.68e-15 | 148 |
epithelial tube | 2.70e-13 | 117 |
trunk mesenchyme | 1.31e-12 | 122 |
vasculature | 1.85e-10 | 78 |
vascular system | 1.85e-10 | 78 |
trunk | 5.80e-10 | 199 |
anatomical conduit | 3.73e-09 | 240 |
epithelial vesicle | 1.22e-08 | 78 |
muscle tissue | 3.72e-08 | 64 |
musculature | 3.72e-08 | 64 |
musculature of body | 3.72e-08 | 64 |
skeletal muscle tissue | 4.23e-08 | 62 |
striated muscle tissue | 4.23e-08 | 62 |
myotome | 4.23e-08 | 62 |
urinary system structure | 6.99e-08 | 47 |
vessel | 8.23e-08 | 68 |
renal system | 1.39e-07 | 48 |
multilaminar epithelium | 2.54e-07 | 83 |
splanchnic layer of lateral plate mesoderm | 2.87e-07 | 83 |
pigment epithelium of eye | 3.42e-07 | 11 |
dense mesenchyme tissue | 8.09e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.44e-09 | 143 |