FFCP PHASE1:Hg19::chr8:38261880..38261914,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=137994 | |EntrezGene=137994 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14648 | |HGNC=14648 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000527175_5end | |association_with_transcript=-16bp_to_ENST00000527175_5end | ||
|cluster_id=chr8:38261880..38261914,+ | |||
|coexpression_cluster_id=C2011 | |||
|description=CAGE_peak_3_at_LETM2_5end | |description=CAGE_peak_3_at_LETM2_5end | ||
|id=chr8:38261880..38261914,+ | |id=chr8:38261880..38261914,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.78e-31!254;CL:0000220!1.77e-24!246;CL:0002321!8.74e-24!248;CL:0000548!1.24e-19!679;CL:0000004!1.24e-19!679;CL:0000255!1.24e-19!679;CL:0000012!5.54e-19!682;CL:0000222!3.38e-16!119;CL:0000076!1.56e-15!62;CL:0000003!6.68e-14!722;CL:0000144!5.35e-12!625;CL:0000213!1.08e-11!57;CL:0000215!1.08e-11!57;CL:0000063!5.42e-11!578;CL:0000077!5.55e-10!19;CL:0000055!2.59e-09!180;CL:0002076!3.09e-09!43;CL:0002371!1.16e-08!591;CL:0002078!6.66e-07!44;CL:0000223!8.49e-07!59 | |ontology_enrichment_celltype=CL:0000066!9.78e-31!254;CL:0000220!1.77e-24!246;CL:0002321!8.74e-24!248;CL:0000548!1.24e-19!679;CL:0000004!1.24e-19!679;CL:0000255!1.24e-19!679;CL:0000012!5.54e-19!682;CL:0000222!3.38e-16!119;CL:0000076!1.56e-15!62;CL:0000003!6.68e-14!722;CL:0000144!5.35e-12!625;CL:0000213!1.08e-11!57;CL:0000215!1.08e-11!57;CL:0000063!5.42e-11!578;CL:0000077!5.55e-10!19;CL:0000055!2.59e-09!180;CL:0002076!3.09e-09!43;CL:0002371!1.16e-08!591;CL:0002078!6.66e-07!44;CL:0000223!8.49e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000077;6.03e-13;19!CL:0002076;5.09e-08;42!CL:0000349;7.46e-07;19!CL:0000076;8.25e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.12e-28,253;CL:0002321,9.67e-14,250;CL:0000076,2.80e-13,63;CL:0000077,6.72e-13,19;CL:0002076,5.44e-10,42;CL:0000222,4.64e-09,121;CL:0000213,6.16e-09,58;CL:0000215,6.16e-09,58;CL:0000223,1.59e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:120;2.91e-07;27!DOID:193;3.74e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:120,2.41e-07,27;DOID:193,2.60e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0003914!3.48e-09!118;UBERON:0000119!4.28e-09!312;UBERON:0000490!1.10e-08!138;UBERON:0000483!1.34e-08!309;UBERON:0005256!5.08e-08!143;UBERON:0002049!8.41e-08!79;UBERON:0007798!8.41e-08!79;UBERON:0003100!5.90e-07!41;UBERON:0000486!6.36e-07!82;UBERON:0000055!8.81e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003100,1.45e-07,41 | |||
|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,0,0,0,0.737201809504527,0.697801167972428,4.36882744260345,5.27533956456907,0.990130823680373,0,1.34465029290355,1.20538905604795,2.92124036154949,1.95173119516203,0.246242116153576,0.408001382488506,0.313454721478088,0,0.958120975510189,0.627713197974014,0,0,0,0,0,0,3.67768489791571,6.92773613189975,5.17655614233503,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.557052284425868,0,0,0,1.28091319725675,2.21100890851793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,1.0843174571537,0.50133791063589,0.724232594804119,0.795285947051099,0,0.756278537312543,0.886917589850256,1.93236528524877,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,1.19257444420023,1.72046919021225,0.694281003215189,0.56530794192401,0.838998872419812,1.6507082516404,1.25396979922086,0,2.13459757612026,0,3.62546385398232,4.56163263431108,0.488124115096339,1.10298924103761,0,0.714397826272638,0.44905874525234,0.788280363383256,3.06633274931766,0.949265659568129,0.732806975721629,0,0,3.48875241714027,0.496971951695318,0.12663051166458,0.662045904066094,0.286836620748814,1.06400514659507,2.24271040056923,1.06748995729705,4.19334832309172,0.933633106199299,1.48181739276657,1.79808093424805,0,0,3.51482147750695,1.24864030732128,1.1409436430889,0.597794722207204,0.587172493218824,0.647491777472526,0.421352420106746,0.204154171254893,1.35117749042945,0,0,0,4.55080680969013,0.718618141816238,0.841680569770331,0.250237039743928,1.10825646193673,0.438977620880838,0,0,3.74326204428069,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,1.03052529238439,0.772921620136887,1.11670113798954,0.675105328965065,0.194874010322397,0,0.552299391853796,0.484938170456436,0.355009592516614,0.906768884048762,1.52604533079439,8.69673839234836,7.9096374971342,4.87567812161307,0,0,0,0.207322110030741,0.504641701751257,0,0,0,2.76269842704961,0,0.721879481669586,1.0647612003586,0.842923450390509,0,0.992645754591546,0.653638332277218,0.474541238222193,1.07865046528132,0.588664395376038,0.769494313892781,1.4763109092493,4.20725321410337,0.8231480226628,1.47008711385542,0,0,0,0,0.860919069801795,3.43135620597051,8.67027254728142,4.49607013030478,0.201057944823262,7.68484094815796,1.62904152655162,9.35941306751621,1.44331342025273,0.115930404975077,1.17408694235822,1.44366447761074,0.925971025153221,0.380508304469197,0,0,0,0,0,22.4961201568265,8.56708853814184,7.65585525108887,15.941417041107,6.1033127087932,2.68367875415648,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,2.24262168690721,0.43596006883328,2.12681028880755,0.646358578788889,0,2.535908257668,0.531876233169741,0,2.05765899409714,2.83698264046557,3.19706614819319,0.285955987316295,0.542621605391443,2.46972101034231,2.93162565864362,0.710783897485092,2.37585561880029,3.61727252471503,7.84380112740265,5.89840647974137,0,0,0,2.15662369942424,1.14861935834114,0,1.30303176000821,0.61642896765115,0.537182889719687,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0.12269149171914,0.500170521059677,0.542530047399471,0,0.892144943985809,0.473107245101804,0.585707074963566,0,0,2.0694614258501,1.99267679560631,1.47495334833363,0.347534457872331,0.195801157462741,0,0,0,0,3.03127571446259,0,3.32629322662648,0.744323423456331,0.153461973288062,0,0,0,0.321707842287215,0,0.462629081407967,1.24293207719189,2.21743321237285,6.75030757938707,1.39452454151951,0,4.21063587636898,2.4861867012692,1.03333003348146,2.1850940160806,0.262248829918848,1.35359883872224,1.00119938235739,4.70609861506113,0,0.844413031143006,0,1.70093705276516,2.15915916102139,1.54227252690289,3.52230368807009,2.50844886927427,3.82314409567557,4.98645605357235,4.47749509444357,0,0,0.512900250232778,1.64007322849853,3.25378394664303,0.103041011647722,0,0,6.3169209179579,6.50060246036521,0,1.35339005608971,1.07834031980251,0.767518373630648,1.24052915236078,0.537101224341368,0.435050081742686,1.19317278382541,0.178064071293475,6.7766815298001,5.38132188622297,3.06270509987002,0.708104465988849,1.85938219718914,0,2.0911118104818,0.308033580176089,3.72614221221915,2.60979897622522,0.18532421910392,0.143124886741991,0,0.949138274156178,0.571890581771475,0.511795582622668,0.42793898803392,1.59101623962968,0,0.539617372749944,0,0.706874414074119,4.65019707618627,0,1.68503382495592,0.48763373908959,1.46228093778771,1.05650146756755,0.545999645631943,0,0,1.10273068709225,0,0.438450885253763,2.89387767133344,0.655894752046633,0.405820753925408,0,1.40847801266121,2.72481569187698,1.3754865741837,0.35667105148125,1.41904425628239,0.422215270595328,0.658589785919804,2.65631221636001,1.39973888097993,4.61866141082458,7.37332503089366,6.53345909167936,0.0941438007767792,1.72202149068492,3.36942951335251,3.10401107475673,2.52695740227655,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,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| ||
|short_description=p3@LETM2 | |short_description=p3@LETM2 | ||
}} | }} |
Latest revision as of 03:36, 18 September 2015
Short description: | p3@LETM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LETM2_5end |
Coexpression cluster: | C2011_mucinous_mesothelioma_squamous_glioblastoma_anaplastic_Mallassezderived_amniotic |
Association with transcript: | -16bp_to_ENST00000527175_5end |
EntrezGene: | LETM2 |
HGNC: | 14648 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.12e-28 | 253 |
embryonic cell | 9.67e-14 | 250 |
squamous epithelial cell | 2.80e-13 | 63 |
mesothelial cell | 6.72e-13 | 19 |
endo-epithelial cell | 5.44e-10 | 42 |
mesodermal cell | 4.64e-09 | 121 |
lining cell | 6.16e-09 | 58 |
barrier cell | 6.16e-09 | 58 |
endodermal cell | 1.59e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
female organism | 1.45e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 2.41e-07 | 27 |
reproductive organ cancer | 2.60e-07 | 29 |