FFCP PHASE1:Hg19::chr7:29234147..29234156,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1124 | |EntrezGene=1124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1944 | |HGNC=1944 | ||
|TSSclassifier=strong | |||
|UniProt=F5GWP4,A4D1A2,P52757 | |UniProt=F5GWP4,A4D1A2,P52757 | ||
|association_with_transcript=26bp_to_ENST00000435288,NM_004067,uc003szz.2,uc010kva.2,uc010kvb.2,uc010kvc.2,uc010kvd.2,uc011jzt.1_5end | |association_with_transcript=26bp_to_ENST00000435288,NM_004067,uc003szz.2,uc010kva.2,uc010kvb.2,uc010kvc.2,uc010kvd.2,uc011jzt.1_5end | ||
|cluster_id=chr7:29234147..29234156,+ | |||
|coexpression_cluster_id=C1458 | |coexpression_cluster_id=C1458 | ||
|description=CAGE_peak_24_at_CHN2_5end | |description=CAGE_peak_24_at_CHN2_5end | ||
|id=chr7:29234147..29234156,+ | |id=chr7:29234147..29234156,+ | ||
|ontology_enrichment_celltype=CL:0002274!9.45e-11!5;CL:0000457!9.45e-11!5;CL:0002191!9.45e-11!5;CL:0000097!9.45e-11!5;CL:0000831!9.45e-11!5;CL:0002028!9.45e-11!5;CL:0000163!2.67e-08!9 | |ontology_enrichment_celltype=CL:0002274!9.45e-11!5;CL:0000457!9.45e-11!5;CL:0002191!9.45e-11!5;CL:0000097!9.45e-11!5;CL:0000831!9.45e-11!5;CL:0002028!9.45e-11!5;CL:0000163!2.67e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0000167;5.71e-21;1!CL:0000164;5.71e-21;1!CL:0000502;5.71e-21;1!CL:0000172;5.71e-21;1!CL:0000173;5.71e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,4.22e-21,1;CL:0000164,4.22e-21,1;CL:0000502,4.22e-21,1;CL:0000172,4.22e-21,1;CL:0000173,4.22e-21,1;CL:0002351,4.22e-21,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.03e-60;3!CL:0002351;5.71e-21;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4430;5.71e-21;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,4.22e-21,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.96e-36!57;UBERON:0005068!4.96e-36!57;UBERON:0006241!4.96e-36!57;UBERON:0007135!4.96e-36!57;UBERON:0002616!3.16e-32!59;UBERON:0000955!1.85e-31!69;UBERON:0006238!1.85e-31!69;UBERON:0001017!6.53e-30!82;UBERON:0005743!5.29e-28!86;UBERON:0002780!6.48e-28!41;UBERON:0001890!6.48e-28!41;UBERON:0006240!6.48e-28!41;UBERON:0000073!3.50e-27!94;UBERON:0001016!3.50e-27!94;UBERON:0003080!4.45e-27!42;UBERON:0001893!9.59e-27!34;UBERON:0002020!3.91e-26!34;UBERON:0003528!3.91e-26!34;UBERON:0001869!4.60e-26!32;UBERON:0002791!4.88e-25!33;UBERON:0007023!6.75e-25!115;UBERON:0002346!1.72e-23!90;UBERON:0003075!2.13e-23!86;UBERON:0007284!2.13e-23!86;UBERON:0002619!2.73e-23!22;UBERON:0001950!4.21e-23!20;UBERON:0000956!5.01e-20!25;UBERON:0000203!5.01e-20!25;UBERON:0003056!2.14e-16!61;UBERON:0000033!2.34e-16!123;UBERON:0000153!4.05e-16!129;UBERON:0007811!4.05e-16!129;UBERON:0000924!2.12e-11!173;UBERON:0006601!2.12e-11!173;UBERON:0004121!4.39e-11!169;UBERON:0004733!3.50e-10!12;UBERON:0002028!3.50e-10!12;UBERON:0007277!3.50e-10!12;UBERON:0003076!6.06e-10!15;UBERON:0003057!6.06e-10!15;UBERON:0000025!1.37e-09!194;UBERON:0004732!2.81e-09!13;UBERON:0001871!4.27e-09!7;UBERON:0000200!7.18e-09!6;UBERON:0002680!3.30e-08!9;UBERON:0001895!3.30e-08!9;UBERON:0010092!3.30e-08!9;UBERON:0002021!1.27e-07!5;UBERON:0002308!1.55e-07!9;UBERON:0000125!1.55e-07!9;UBERON:0001872!1.84e-07!5;UBERON:0002771!7.58e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!4.96e-36!57;UBERON:0005068!4.96e-36!57;UBERON:0006241!4.96e-36!57;UBERON:0007135!4.96e-36!57;UBERON:0002616!3.16e-32!59;UBERON:0000955!1.85e-31!69;UBERON:0006238!1.85e-31!69;UBERON:0001017!6.53e-30!82;UBERON:0005743!5.29e-28!86;UBERON:0002780!6.48e-28!41;UBERON:0001890!6.48e-28!41;UBERON:0006240!6.48e-28!41;UBERON:0000073!3.50e-27!94;UBERON:0001016!3.50e-27!94;UBERON:0003080!4.45e-27!42;UBERON:0001893!9.59e-27!34;UBERON:0002020!3.91e-26!34;UBERON:0003528!3.91e-26!34;UBERON:0001869!4.60e-26!32;UBERON:0002791!4.88e-25!33;UBERON:0007023!6.75e-25!115;UBERON:0002346!1.72e-23!90;UBERON:0003075!2.13e-23!86;UBERON:0007284!2.13e-23!86;UBERON:0002619!2.73e-23!22;UBERON:0001950!4.21e-23!20;UBERON:0000956!5.01e-20!25;UBERON:0000203!5.01e-20!25;UBERON:0003056!2.14e-16!61;UBERON:0000033!2.34e-16!123;UBERON:0000153!4.05e-16!129;UBERON:0007811!4.05e-16!129;UBERON:0000924!2.12e-11!173;UBERON:0006601!2.12e-11!173;UBERON:0004121!4.39e-11!169;UBERON:0004733!3.50e-10!12;UBERON:0002028!3.50e-10!12;UBERON:0007277!3.50e-10!12;UBERON:0003076!6.06e-10!15;UBERON:0003057!6.06e-10!15;UBERON:0000025!1.37e-09!194;UBERON:0004732!2.81e-09!13;UBERON:0001871!4.27e-09!7;UBERON:0000200!7.18e-09!6;UBERON:0002680!3.30e-08!9;UBERON:0001895!3.30e-08!9;UBERON:0010092!3.30e-08!9;UBERON:0002021!1.27e-07!5;UBERON:0002308!1.55e-07!9;UBERON:0000125!1.55e-07!9;UBERON:0001872!1.84e-07!5;UBERON:0002771!7.58e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.60e-30;6!UBERON:0007195;5.71e-21;1!UBERON:0002680;1.28e-20;9!UBERON:0001895;1.28e-20;9!UBERON:0004733;1.20e-15;12!UBERON:0002028;1.20e-15;12!UBERON:0004732;1.69e-14;13!UBERON:0001897;3.52e-11;2!UBERON:0010225;3.52e-11;2!UBERON:0002114;5.18e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.69e-30,6;UBERON:0006215,1.69e-30,6;UBERON:0007195,9.43e-21,1;UBERON:0002680,1.33e-20,9;UBERON:0001895,1.33e-20,9;UBERON:0010092,1.33e-20,9;UBERON:0004733,1.23e-15,12;UBERON:0002028,1.23e-15,12;UBERON:0007277,1.23e-15,12;UBERON:0004732,1.73e-14,13;UBERON:0003076,1.20e-12,15;UBERON:0003057,1.20e-12,15;UBERON:0001897,2.73e-11,2;UBERON:0010225,2.73e-11,2;UBERON:0000073,2.27e-09,53;UBERON:0002616,2.27e-09,53;UBERON:0001049,7.01e-09,56;UBERON:0005068,7.01e-09,56;UBERON:0006241,7.01e-09,56;UBERON:0007135,7.01e-09,56;UBERON:0002114,4.84e-08,2;UBERON:0000955,3.06e-07,68;UBERON:0006238,3.06e-07,68 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.414656231081544,0.576479813667846,0.37872730027914,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0,0.128139149255701,0,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,1.11136990144637,0.969332746095218,0.834912883456661,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,1.52581736317083,3.75969483766164,2.06883333267483,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569797163602908,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0.129282956361551,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.500763722825999,0,0.665574309221114,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0.743614585554013,0,0,0.0788617450012534,0,0,0,0.321146125482298,0,0.319267718114302,0.41023272848151,2.01657356977374,0.553258019713743,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,1.56302802246618,0,0,0,0.607838261565552,0,0.826747186004736,0.253663240775627,0.546974809018219,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.203909198930495,0.394636641377094,0,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,1.19370465096821,0,0,0,0,0,0.218559560503957,0,0,1.64973582971138,0,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.543931921527318,2.61810414204226,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,1.65833887891756,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.414656231081544,0.576479813667846,0.37872730027914,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460385919864187,0,0.128139149255701,0,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,1.11136990144637,0.969332746095218,0.834912883456661,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,1.52581736317083,3.75969483766164,2.06883333267483,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569797163602908,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0.129282956361551,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.500763722825999,0,0.665574309221114,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0,0,0.743614585554013,0,0,0.0788617450012534,0,0,0,0.321146125482298,0,0.319267718114302,0.41023272848151,2.01657356977374,0.553258019713743,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,0,0,1.56302802246618,0,0,0,0.607838261565552,0,0.826747186004736,0.253663240775627,0.546974809018219,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.203909198930495,0.394636641377094,0,0,0,0.628462359664008,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,1.19370465096821,0,0,0,0,0,0.218559560503957,0,0,1.64973582971138,0,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.543931921527318,2.61810414204226,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,1.65833887891756,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p24@CHN2 | |short_description=p24@CHN2 | ||
}} | }} |
Latest revision as of 04:07, 18 September 2015
Short description: | p24@CHN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_CHN2_5end |
Coexpression cluster: | C1458_cerebellum_small_temporal_parietal_occipital_somatostatinoma_neuroectodermal |
Association with transcript: | 26bp_to_ENST00000435288, NM_004067, uc003szz.2, uc010kva.2, uc010kvb.2, uc010kvc.2, uc010kvd.2, uc011jzt.1_5end |
EntrezGene: | CHN2 |
HGNC: | 1944 |
UniProt: | F5GWP4A4D1A2P52757 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 4.22e-21 | 1 |
enteroendocrine cell | 4.22e-21 | 1 |
type D enteroendocrine cell | 4.22e-21 | 1 |
somatostatin secreting cell | 4.22e-21 | 1 |
pancreatic D cell | 4.22e-21 | 1 |
progenitor cell of endocrine pancreas | 4.22e-21 | 1 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.69e-30 | 6 |
rhombic lip | 1.69e-30 | 6 |
stroma of bone marrow | 9.43e-21 | 1 |
regional part of metencephalon | 1.33e-20 | 9 |
metencephalon | 1.33e-20 | 9 |
future metencephalon | 1.33e-20 | 9 |
segmental subdivision of hindbrain | 1.23e-15 | 12 |
hindbrain | 1.23e-15 | 12 |
presumptive hindbrain | 1.23e-15 | 12 |
segmental subdivision of nervous system | 1.73e-14 | 13 |
posterior neural tube | 1.20e-12 | 15 |
chordal neural plate | 1.20e-12 | 15 |
dorsal plus ventral thalamus | 2.73e-11 | 2 |
thalamic complex | 2.73e-11 | 2 |
regional part of nervous system | 2.27e-09 | 53 |
regional part of brain | 2.27e-09 | 53 |
neural tube | 7.01e-09 | 56 |
neural rod | 7.01e-09 | 56 |
future spinal cord | 7.01e-09 | 56 |
neural keel | 7.01e-09 | 56 |
duodenum | 4.84e-08 | 2 |
brain | 3.06e-07 | 68 |
future brain | 3.06e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 4.22e-21 | 1 |