FFCP PHASE1:Hg19::chr1:45987548..45987566,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:45987548..45987566,-
|short_description=p1@PRDX1
|description=CAGE_peak_1_at_PRDX1_5end
|association_with_transcript=-9bp_to_ENST00000483583_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5052 | |EntrezGene=5052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9352 | |HGNC=9352 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_ENST00000483583_5end | |||
|cluster_id=chr1:45987548..45987566,- | |||
|description=CAGE_peak_1_at_PRDX1_5end | |||
|id=chr1:45987548..45987566,- | |||
|ontology_enrichment_celltype=CL:0000548!7.96e-26!679;CL:0000004!7.96e-26!679;CL:0000255!7.96e-26!679;CL:0000012!4.37e-25!682;CL:0002321!6.44e-17!248;CL:0000222!1.13e-16!119;CL:0000144!3.14e-16!625;CL:0000220!3.59e-16!246;CL:0000066!8.01e-15!254;CL:0000003!8.54e-15!722;CL:0000055!2.70e-13!180;CL:0002371!1.58e-11!591;CL:0000393!1.91e-10!60;CL:0000211!1.91e-10!60;CL:0000680!3.53e-10!57;CL:0000056!3.53e-10!57;CL:0000355!3.53e-10!57;CL:0000187!1.17e-09!54;CL:0000063!2.83e-09!578;CL:0000183!4.97e-09!59;CL:0000192!9.19e-09!42;CL:0000514!9.19e-09!42;CL:0000359!5.39e-08!32;CL:0000213!1.30e-07!57;CL:0000215!1.30e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.70e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.29e-17,250;CL:0000222,8.66e-17,121;CL:0000066,5.08e-15,253;CL:0000393,4.51e-10,61;CL:0000211,4.51e-10,61;CL:0000680,8.42e-10,58;CL:0000056,8.42e-10,58;CL:0000355,8.42e-10,58;CL:0000187,2.78e-09,55;CL:0000192,2.36e-08,43;CL:0000514,2.36e-08,43;CL:0000213,5.13e-08,58;CL:0000215,5.13e-08,58;CL:0000359,5.39e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!4.95e-11!216;UBERON:0000914!2.12e-10!83;UBERON:0002329!2.12e-10!83;UBERON:0003077!2.12e-10!83;UBERON:0003059!2.12e-10!83;UBERON:0007282!2.12e-10!83;UBERON:0009618!2.12e-10!83;UBERON:0007285!2.12e-10!83;UBERON:0003914!5.09e-10!118;UBERON:0000490!7.37e-10!138;UBERON:0000486!8.41e-10!82;UBERON:0004290!1.40e-09!70;UBERON:0000926!1.57e-09!448;UBERON:0004120!1.57e-09!448;UBERON:0006603!1.57e-09!448;UBERON:0005256!1.92e-09!143;UBERON:0001637!1.94e-09!42;UBERON:0003509!1.94e-09!42;UBERON:0004572!1.94e-09!42;UBERON:0004872!2.20e-09!84;UBERON:0002049!1.24e-08!79;UBERON:0007798!1.24e-08!79;UBERON:0001134!2.58e-08!61;UBERON:0002036!2.58e-08!61;UBERON:0003082!2.58e-08!61;UBERON:0001981!4.29e-08!60;UBERON:0007500!4.29e-08!60;UBERON:0004537!4.29e-08!60;UBERON:0006965!4.29e-08!60;UBERON:0000055!5.02e-08!69;UBERON:0002385!7.26e-08!63;UBERON:0001015!7.26e-08!63;UBERON:0000383!7.26e-08!63;UBERON:0003104!9.99e-08!238;UBERON:0009142!9.99e-08!238;UBERON:0000468!3.33e-07!659;UBERON:0004573!9.02e-07!33;UBERON:0004571!9.02e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.60e-07;42!UBERON:0003509;4.60e-07;42!UBERON:0004572;4.60e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,6.80e-11,148;UBERON:0003914,2.93e-10,117;UBERON:0002100,1.07e-09,199;UBERON:0004872,1.17e-09,83;UBERON:0000486,1.64e-09,83;UBERON:0007503,1.85e-09,78;UBERON:0001637,1.94e-09,42;UBERON:0003509,1.94e-09,42;UBERON:0004572,1.94e-09,42;UBERON:0002329,2.89e-09,71;UBERON:0003059,2.89e-09,71;UBERON:0007282,2.89e-09,71;UBERON:0004290,2.89e-09,71;UBERON:0009618,2.89e-09,71;UBERON:0007524,3.91e-09,73;UBERON:0003077,5.24e-09,72;UBERON:0007285,5.24e-09,72;UBERON:0002049,6.67e-09,78;UBERON:0007798,6.67e-09,78;UBERON:0007500,2.10e-08,59;UBERON:0001981,2.10e-08,59;UBERON:0004537,2.10e-08,59;UBERON:0006965,2.10e-08,59;UBERON:0000055,2.64e-08,68;UBERON:0001134,5.23e-08,62;UBERON:0002036,5.23e-08,62;UBERON:0003082,5.23e-08,62;UBERON:0005256,9.93e-08,122;UBERON:0002385,1.41e-07,64;UBERON:0001015,1.41e-07,64;UBERON:0000383,1.41e-07,64;UBERON:0003104,2.27e-07,160;UBERON:0009142,2.27e-07,160;UBERON:0000119,5.69e-07,309;UBERON:0004573,9.02e-07,33;UBERON:0004571,9.02e-07,33 | |||
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| ||
|short_description=p1@PRDX1 | |||
}} | }} |
Latest revision as of 07:52, 18 September 2015
Short description: | p1@PRDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDX1_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENST00000483583_5end |
EntrezGene: | PRDX1 |
HGNC: | 9352 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.29e-17 | 250 |
mesodermal cell | 8.66e-17 | 121 |
epithelial cell | 5.08e-15 | 253 |
electrically responsive cell | 4.51e-10 | 61 |
electrically active cell | 4.51e-10 | 61 |
muscle precursor cell | 8.42e-10 | 58 |
myoblast | 8.42e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.42e-10 | 58 |
muscle cell | 2.78e-09 | 55 |
smooth muscle cell | 2.36e-08 | 43 |
smooth muscle myoblast | 2.36e-08 | 43 |
lining cell | 5.13e-08 | 58 |
barrier cell | 5.13e-08 | 58 |
vascular associated smooth muscle cell | 5.39e-08 | 32 |