FFCP PHASE1:Hg19::chr17:79849438..79849493,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:79849438..79849493,-
|short_description=p1@ALYREF
|description=CAGE_peak_1_at_ALYREF_5end
|association_with_transcript=0bp_to_ENST00000331204,ENST00000505...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10189 | |EntrezGene=10189 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19071 | |HGNC=19071 | ||
|TSSclassifier=strong | |||
|UniProt=Q86V81,E9PB61 | |UniProt=Q86V81,E9PB61 | ||
|association_with_transcript=0bp_to_ENST00000331204,ENST00000505490,NM_005782,uc002kbu.2_5end | |||
|cluster_id=chr17:79849438..79849493,- | |||
|coexpression_cluster_id=C2408 | |||
|description=CAGE_peak_1_at_ALYREF_5end | |||
|id=chr17:79849438..79849493,- | |||
|ontology_enrichment_celltype=CL:0000012!8.03e-42!682;CL:0000548!1.47e-40!679;CL:0000004!1.47e-40!679;CL:0000255!1.47e-40!679;CL:0000003!1.87e-28!722;CL:0000144!5.78e-27!625;CL:0002371!7.81e-20!591;CL:0000063!4.08e-17!578;CL:0002321!1.46e-16!248;CL:0000220!3.64e-16!246;CL:0000066!2.39e-15!254;CL:0000222!8.68e-09!119;CL:0000076!2.00e-07!62 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.12e-16,250;CL:0000066,1.48e-15,253;CL:0000222,7.35e-09,121;CL:0000076,4.93e-07,63;CL:0000115,9.91e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.68e-22!235;DOID:14566!9.78e-22!239;DOID:2531!1.38e-17!51;DOID:0060083!1.38e-17!51;DOID:1240!2.18e-14!39;DOID:0050686!2.27e-13!137;DOID:8692!7.04e-12!31;DOID:0050687!2.40e-09!143;DOID:305!2.45e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.19e-11;39!DOID:8692;1.58e-11;31!DOID:2531;4.20e-11;51!DOID:0060083;4.20e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.68e-22,235;DOID:14566,9.78e-22,239;DOID:2531,1.38e-17,51;DOID:0060083,1.38e-17,51;DOID:1240,2.18e-14,39;DOID:0050686,2.27e-13,137;DOID:8692,7.04e-12,31;DOID:0050687,2.40e-09,143;DOID:305,2.45e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000487!1.72e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;1.30e-07;33!UBERON:0000487;1.75e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.72e-07,22;UBERON:0000490,8.16e-07,148 | |||
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112.519540798435 | ||
|short_description=p1@ALYREF | |||
}} | }} |
Latest revision as of 09:19, 18 September 2015
Short description: | p1@ALYREF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ALYREF_5end |
Coexpression cluster: | C2408_Alveolar_Renal_Mesenchymal_Mammary_chronic_Smooth_Trabecular |
Association with transcript: | 0bp_to_ENST00000331204, ENST00000505490, NM_005782, uc002kbu.2_5end |
EntrezGene: | ALYREF |
HGNC: | 19071 |
UniProt: | Q86V81E9PB61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.12e-16 | 250 |
epithelial cell | 1.48e-15 | 253 |
mesodermal cell | 7.35e-09 | 121 |
squamous epithelial cell | 4.93e-07 | 63 |
endothelial cell | 9.91e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 1.72e-07 | 22 |
unilaminar epithelium | 8.16e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.68e-22 | 235 |
disease of cellular proliferation | 9.78e-22 | 239 |
hematologic cancer | 1.38e-17 | 51 |
immune system cancer | 1.38e-17 | 51 |
leukemia | 2.18e-14 | 39 |
organ system cancer | 2.27e-13 | 137 |
myeloid leukemia | 7.04e-12 | 31 |
cell type cancer | 2.40e-09 | 143 |
carcinoma | 2.45e-08 | 106 |