FFCP PHASE1:Hg19::chr3:45928029..45928050,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10803 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1610 | |||
|TSSclassifier=strong | |||
|UniProt=C9JWC0 | |||
|association_with_transcript=0bp_to_ENST00000355983,ENST00000422395_5end | |||
|cluster_id=chr3:45928029..45928050,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_1_at_CCR9_5end | |||
|id=chr3:45928029..45928050,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.19e-37!18;CL:0000789!1.19e-37!18;CL:0002420!1.19e-37!18;CL:0002419!1.19e-37!18;CL:0000790!1.19e-37!18;CL:0000838!7.38e-33!52;CL:0000084!4.40e-32!25;CL:0000827!4.40e-32!25;CL:0000542!4.47e-32!53;CL:0000051!4.47e-32!53;CL:0000625!7.83e-26!11;CL:0002087!4.77e-18!119;CL:0000738!4.00e-17!140;CL:0000624!6.21e-16!6;CL:0002031!1.21e-13!124;CL:0000037!4.94e-12!172;CL:0000566!4.94e-12!172;CL:0000988!7.91e-11!182;CL:0002032!1.39e-09!165;CL:0000837!1.39e-09!165;CL:0000898!8.30e-09!3;CL:0000623!7.20e-08!3;CL:0000825!7.20e-08!3;CL:0000236!8.05e-08!14;CL:0000842!1.27e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.14e-42;18!CL:0000789;3.14e-42;18!CL:0002419;3.14e-42;18!CL:0000084;1.26e-29;25!CL:0000624;7.73e-29;6!CL:0000625;3.00e-20;11!CL:0000542;3.45e-16;53!CL:0000898;2.32e-15;3!CL:0000815;1.29e-10;2!CL:0000792;1.29e-10;2!CL:0002677;1.29e-10;2!CL:0000236;6.12e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.70e-42,18;CL:0000789,2.70e-42,18;CL:0002420,2.70e-42,18;CL:0002419,2.70e-42,18;CL:0000790,2.70e-42,18;CL:0000084,1.13e-29,25;CL:0000827,1.13e-29,25;CL:0000624,6.08e-29,6;CL:0000838,1.49e-25,52;CL:0000542,5.41e-25,53;CL:0000051,5.41e-25,53;CL:0000625,3.05e-20,11;CL:0000898,2.38e-15,3;CL:0000815,1.32e-10,2;CL:0000792,1.32e-10,2;CL:0002677,1.32e-10,2;CL:0002087,1.76e-10,115;CL:0000738,2.15e-09,136;CL:0002031,1.05e-08,120;CL:0000236,3.21e-08,14;CL:0000037,8.13e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;3.14e-42;18!CL:0000051;3.45e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.07e-09!7;UBERON:0000178!6.39e-09!15;UBERON:0000179!6.39e-09!15;UBERON:0000463!6.39e-09!15;UBERON:0002370!4.88e-07!4;UBERON:0005058!4.88e-07!4;UBERON:0009113!4.88e-07!4;UBERON:0003295!4.88e-07!4;UBERON:0005562!4.88e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.48e-11;2!UBERON:0005058;1.48e-11;2!UBERON:0009113;1.48e-11;2!UBERON:0004177;8.61e-10;5!UBERON:0005057;8.61e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.43e-12,4;UBERON:0005058,2.43e-12,4;UBERON:0009113,2.43e-12,4;UBERON:0003295,2.43e-12,4;UBERON:0005562,2.43e-12,4;UBERON:0004177,7.52e-12,7;UBERON:0005057,7.52e-12,7;UBERON:0000974,1.86e-08,10;UBERON:0003351,2.31e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.868043482863407,0,0.32389366601898,0,0,0.755751887377619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,1.09227722252426,0,0,0.400395987036012,2.87376219977242,1.32208974556972,0,0,1.17447437874188,0.382273228125229,2.64342657158052,1.68152568894461,0,1.96709770113833,2.35806457649499,9.66327045297693,0.167186495390678,1.30368906653436,1.4203434172042,0,0.334231370655521,5.89211814949674,5.75988125917415,4.87446954777028,1.79327847615945,0.390178042679635,0,0.276350017785848,0.289803085735052,1.4828656316206,0.267540828089713,0,2.37949619664889,6.13152789763074,7.21617635513523,6.07247260846807,0.95569624297229,0.651083453856419,2.85135613334512,2.10805166708882,3.83959833463255,1.24930726552346,1.18388626022008,0.821127996921047,1.81446068902259,2.40696176205157,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.82926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.862510299438069,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0.764637207142375,0,0.714695326373367,1.23408681925858,0,0,0.79312517629427,0,0,0,0,0,0.782560276832555,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98059040265026,0,0,0,0,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24784275134024,2.18559560503957,0,0,0,0,0,0,0,0.281951753939561,2.06265241515447,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,6.42773964952099,171.935677983448,114.714072018745,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,24.5554028181052,0 | |||
|short_description=p1@CCR9 | |||
}} |
Latest revision as of 09:31, 18 September 2015
Short description: | p1@CCR9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCR9_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000355983, ENST00000422395_5end |
EntrezGene: | CCR9 |
HGNC: | 1610 |
UniProt: | C9JWC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.70e-42 | 18 |
alpha-beta T cell | 2.70e-42 | 18 |
immature T cell | 2.70e-42 | 18 |
mature T cell | 2.70e-42 | 18 |
immature alpha-beta T cell | 2.70e-42 | 18 |
T cell | 1.13e-29 | 25 |
pro-T cell | 1.13e-29 | 25 |
CD4-positive, alpha-beta T cell | 6.08e-29 | 6 |
lymphoid lineage restricted progenitor cell | 1.49e-25 | 52 |
lymphocyte | 5.41e-25 | 53 |
common lymphoid progenitor | 5.41e-25 | 53 |
CD8-positive, alpha-beta T cell | 3.05e-20 | 11 |
naive T cell | 2.38e-15 | 3 |
regulatory T cell | 1.32e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.32e-10 | 2 |
naive regulatory T cell | 1.32e-10 | 2 |
nongranular leukocyte | 1.76e-10 | 115 |
leukocyte | 2.15e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 1.05e-08 | 120 |
B cell | 3.21e-08 | 14 |
hematopoietic stem cell | 8.13e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.43e-12 | 4 |
hemolymphoid system gland | 2.43e-12 | 4 |
thymic region | 2.43e-12 | 4 |
pharyngeal gland | 2.43e-12 | 4 |
thymus primordium | 2.43e-12 | 4 |
hemopoietic organ | 7.52e-12 | 7 |
immune organ | 7.52e-12 | 7 |
neck | 1.86e-08 | 10 |
pharyngeal epithelium | 2.31e-08 | 6 |