FFCP PHASE1:Hg19::chr19:4302375..4302406,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:4302375..4302406,- to FFCP PHASE1:Hg19::chr19:4302375..4302406,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126259 | |EntrezGene=126259 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28324 | |HGNC=28324 | ||
|TSSclassifier=strong | |||
|UniProt=Q96BF3 | |UniProt=Q96BF3 | ||
|association_with_transcript=21bp_to_ENST00000301272,NM_001169126,NM_144615,uc002lzx.1,uc010dtv.1_5end | |||
|cluster_id=chr19:4302375..4302406,- | |||
|coexpression_cluster_id=C1213 | |||
|description=CAGE_peak_1_at_TMIGD2_5end | |||
|id=chr19:4302375..4302406,- | |||
|ontology_enrichment_celltype=CL:0000791!2.99e-20!18;CL:0000789!2.99e-20!18;CL:0002420!2.99e-20!18;CL:0002419!2.99e-20!18;CL:0000790!2.99e-20!18;CL:0000084!7.94e-18!25;CL:0000827!7.94e-18!25;CL:0000625!2.01e-13!11;CL:0000542!1.21e-11!53;CL:0000051!1.21e-11!53;CL:0000838!3.13e-11!52;CL:0000037!2.39e-08!172;CL:0000566!2.39e-08!172;CL:0000624!2.51e-07!6;CL:0000988!4.97e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.15e-34;18!CL:0000789;7.15e-34;18!CL:0002419;7.15e-34;18!CL:0000084;1.55e-29;25!CL:0000625;1.02e-22;11!CL:0000624;1.60e-10;6!CL:0000784;2.49e-09;3!CL:0000542;2.20e-08;53!CL:0000226;4.61e-08;3!CL:0000623;4.61e-08;3!CL:0000842;4.61e-08;3!CL:0000767;1.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.72e-34,18;CL:0000789,6.72e-34,18;CL:0002420,6.72e-34,18;CL:0002419,6.72e-34,18;CL:0000790,6.72e-34,18;CL:0000084,1.55e-29,25;CL:0000827,1.55e-29,25;CL:0000625,9.03e-23,11;CL:0000838,2.15e-16,52;CL:0000542,5.64e-16,53;CL:0000051,5.64e-16,53;CL:0000037,1.51e-11,168;CL:0000624,1.67e-10,6;CL:0000988,1.77e-10,177;CL:0000738,2.35e-10,136;CL:0000784,2.56e-09,3;CL:0002087,8.75e-09,115;CL:0000623,3.88e-08,3;CL:0000825,3.88e-08,3;CL:0000226,5.21e-08,3;CL:0000842,5.21e-08,3;CL:0000767,1.46e-07,3;CL:0002032,1.67e-07,161;CL:0000837,1.67e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;7.15e-34;18!CL:0000051;2.20e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.50e-21!115;UBERON:0001049!9.12e-11!57;UBERON:0005068!9.12e-11!57;UBERON:0006241!9.12e-11!57;UBERON:0007135!9.12e-11!57;UBERON:0000178!5.10e-10!15;UBERON:0000179!5.10e-10!15;UBERON:0000463!5.10e-10!15;UBERON:0001893!7.26e-09!34;UBERON:0002020!1.29e-08!34;UBERON:0003528!1.29e-08!34;UBERON:0002791!2.37e-08!33;UBERON:0002780!4.74e-08!41;UBERON:0001890!4.74e-08!41;UBERON:0006240!4.74e-08!41;UBERON:0002616!8.66e-08!59;UBERON:0001017!1.01e-07!82;UBERON:0003080!1.04e-07!42;UBERON:0001869!1.07e-07!32;UBERON:0005743!2.11e-07!86;UBERON:0002619!3.22e-07!22;UBERON:0000955!6.15e-07!69;UBERON:0006238!6.15e-07!69;UBERON:0002346!6.33e-07!90;UBERON:0000956!8.84e-07!25;UBERON:0000203!8.84e-07!25;UBERON:0004177!9.91e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.64e-21;15!UBERON:0000179;8.64e-21;15!UBERON:0000463;8.64e-21;15!UBERON:0002390;5.97e-19;32!UBERON:0002193;1.08e-12;42!UBERON:0004177;1.46e-08;5!UBERON:0005057;1.46e-08;5!UBERON:0002370;7.32e-07;2!UBERON:0005058;7.32e-07;2!UBERON:0009113;7.32e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.05e-21,15;UBERON:0000179,7.05e-21,15;UBERON:0000463,7.05e-21,15;UBERON:0004177,4.91e-13,7;UBERON:0005057,4.91e-13,7;UBERON:0002370,1.42e-11,4;UBERON:0005058,1.42e-11,4;UBERON:0009113,1.42e-11,4;UBERON:0003295,1.42e-11,4;UBERON:0005562,1.42e-11,4;UBERON:0003351,1.13e-07,6;UBERON:0002193,1.31e-07,108;UBERON:0002390,2.66e-07,98;UBERON:0003061,2.66e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,1.96682138424452,3.0706351847777,2.16742572642506,0,0,0,0.0774672005803016,0,21.139231632109,2.21598163412751,0.200544447470142,1.51907609501096,0.223915474239924,0.647787332037959,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0.382273228125229,5.28685314316103,2.80254281490768,5.00429761072646,6.49142241375649,4.32311839024081,2.05601498999509,1.33749196312542,5.86660079940463,10.4158517261641,7.79306913631645,0.557052284425868,0.294605907474837,0.221533894583621,0,1.0247305578054,0.780356085359269,4.1109476150919,2.21080014228679,5.21645554323094,16.9046682004749,17.3901538258314,13.589618094647,2.94604291013672,6.89796888483458,4.46715679127419,0.759059076058509,11.1497895013434,8.46408490013344,10.4549724889321,12.6483100025329,8.19114311388278,7.49584359314075,6.86654030927649,4.92676798152628,5.44338206706778,0.534880391567015,6.22744936696036,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.174129737299267,0,19.3177405687327,28.0277506282263,19.3157900691374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.348581828608555,0.621966330092223,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.28553435957927,10.836691811106,1.94064817373566,4.49200626979119,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,5.16920065307218,4.74571241800957,2.13455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,3.55213326462519,3.82318603571188,2.27858874869665,3.33524485640905,5.34770955012053,1.94541993357815,4.86028293514303,3.96562588147135,0,0,0,0.185803175125719,0.28853842595289,0.284567373393656,1.11598390910176,1.39705560002972,0.191505370132367,0.635020748171649,12.3356337304331,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,19.9843180798692,2.81974010175699,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,2.76283915531148,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,4.7896618469388,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.964771509003264,0,0.110579259931225,0,0,0,0,0.153900517007594,0,0,0.718061155278177,1.08647371922008,0.31900115973192,0,0.533034776018635,24.5263915669768,0.627921025580099,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0.995261931078505,2.0345239835768,1.22206028986725,0,0,0,1.55022605855557,0,0.702793337176017,0,0,0,0,0,0,0.252746318513952,0,0,1.32930774541437,0.330991955875499,0.313932918407225,0,1.42304773014896,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.696418755514666,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,5.10986352267889,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0.795229689809303,0.817220436669454,0.482259445395058,0.412618309791701,0,0,0,0.607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.258565912723101,0.26446520348538,0,0.704815022316672,0,0.78602152549833,0.414239055347196,1.9846640872478,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0.573409195690071,0.665574309221114,0.558867626472451,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,1.01839517972415,0.637724760305049,0,0,0,0,0,0,0,0.385375350578757,0,0.798169295285756,1.02558182120378,0.252071696221718,0.553258019713743,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,1.04762677792569,0,0,0.405225507710368,0,0.413373593002368,0.443910671357348,0.546974809018219,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0.543757863814654,0.789273282754189,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,3.24131464053368,3.93407208907123,0,0,0,0.196308467114945,0.594092800654172,1.2679671827502,0,1.03382309777839,3.6740996144939,0,0,0,0,0,0.458729283404541,0.430018749454354,0,0.951880862672806,0.436350690340377,1.0580536810308,0,0,0,0.126166424835079,0.109265571963696,7.22181455765191,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.724030971033267,0,0.952257725854961,29.5171317950548,35.0101388628639,0,0.318235791390825,0.202117188958219,0.217716747896961,0,2.35732185551056,0.430333232356058,0,0,0,0,0,0,0.122241444182866,0.81379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| ||
|short_description=p1@TMIGD2 | |||
}} | }} |
Latest revision as of 09:46, 18 September 2015
Short description: | p1@TMIGD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMIGD2_5end |
Coexpression cluster: | C1213_thymus_Dendritic_CD4_non_chronic_vein_CD133 |
Association with transcript: | 21bp_to_ENST00000301272, NM_001169126, NM_144615, uc002lzx.1, uc010dtv.1_5end |
EntrezGene: | TMIGD2 |
HGNC: | 28324 |
UniProt: | Q96BF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.72e-34 | 18 |
alpha-beta T cell | 6.72e-34 | 18 |
immature T cell | 6.72e-34 | 18 |
mature T cell | 6.72e-34 | 18 |
immature alpha-beta T cell | 6.72e-34 | 18 |
T cell | 1.55e-29 | 25 |
pro-T cell | 1.55e-29 | 25 |
CD8-positive, alpha-beta T cell | 9.03e-23 | 11 |
lymphoid lineage restricted progenitor cell | 2.15e-16 | 52 |
lymphocyte | 5.64e-16 | 53 |
common lymphoid progenitor | 5.64e-16 | 53 |
hematopoietic stem cell | 1.51e-11 | 168 |
CD4-positive, alpha-beta T cell | 1.67e-10 | 6 |
hematopoietic cell | 1.77e-10 | 177 |
leukocyte | 2.35e-10 | 136 |
plasmacytoid dendritic cell | 2.56e-09 | 3 |
nongranular leukocyte | 8.75e-09 | 115 |
natural killer cell | 3.88e-08 | 3 |
pro-NK cell | 3.88e-08 | 3 |
single nucleate cell | 5.21e-08 | 3 |
mononuclear cell | 5.21e-08 | 3 |
basophil | 1.46e-07 | 3 |
hematopoietic oligopotent progenitor cell | 1.67e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.67e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 7.05e-21 | 15 |
haemolymphatic fluid | 7.05e-21 | 15 |
organism substance | 7.05e-21 | 15 |
hemopoietic organ | 4.91e-13 | 7 |
immune organ | 4.91e-13 | 7 |
thymus | 1.42e-11 | 4 |
hemolymphoid system gland | 1.42e-11 | 4 |
thymic region | 1.42e-11 | 4 |
pharyngeal gland | 1.42e-11 | 4 |
thymus primordium | 1.42e-11 | 4 |
pharyngeal epithelium | 1.13e-07 | 6 |
hemolymphoid system | 1.31e-07 | 108 |
hematopoietic system | 2.66e-07 | 98 |
blood island | 2.66e-07 | 98 |