FFCP PHASE1:Hg19::chr12:47219733..47219785,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55089 | |EntrezGene=55089 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14679 | |HGNC=14679 | ||
|TSSclassifier=strong | |||
|UniProt=Q969I6,E7EMG3,F8VQY9 | |UniProt=Q969I6,E7EMG3,F8VQY9 | ||
|association_with_transcript=0bp_to_ENST00000266579,ENST00000395426,ENST00000447411,ENST00000547477,NM_001143824,NM_018018,uc001rpi.2,uc001rpj.2,uc009zkl.2_5end | |association_with_transcript=0bp_to_ENST00000266579,ENST00000395426,ENST00000447411,ENST00000547477,NM_001143824,NM_018018,uc001rpi.2,uc001rpj.2,uc009zkl.2_5end | ||
|cluster_id=chr12:47219733..47219785,- | |||
|description=CAGE_peak_2_at_SLC38A4_5end | |description=CAGE_peak_2_at_SLC38A4_5end | ||
|id=chr12:47219733..47219785,- | |id=chr12:47219733..47219785,- | ||
|ontology_enrichment_celltype=CL:0002620;1.02e-09;23!CL:0002559;8.75e-07;5 | |ontology_enrichment_celltype=CL:0000057!5.02e-13!75;CL:0000055!4.12e-11!180;CL:0002620!2.99e-09!23 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;1.02e-09;23!CL:0002559;8.75e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.29e-12,76;CL:0002620,1.03e-09,23;CL:0000136,9.34e-07,15;CL:0002559,9.70e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0003688;3.58e-08;6!UBERON:0002358;3.58e-08;6!UBERON:0003684;3.58e-08;6!UBERON:0001178;3.58e-08;6!UBERON:0002097;1.09e-07;41!UBERON:0005409;4.81e-07;22!UBERON:0000160;6.97e-07;17!UBERON:0001155;7.08e-07;9!UBERON:0002073;8.75e-07;5 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.15e-12!95;UBERON:0000475!4.51e-11!365;UBERON:0002100!6.91e-11!216;UBERON:0003104!1.45e-10!238;UBERON:0009142!1.45e-10!238;UBERON:0000160!2.56e-10!27;UBERON:0004119!8.31e-10!169;UBERON:0000925!8.31e-10!169;UBERON:0006595!8.31e-10!169;UBERON:0005409!1.24e-09!35;UBERON:0001007!2.59e-09!155;UBERON:0001555!2.59e-09!155;UBERON:0007026!2.59e-09!155;UBERON:0002199!2.13e-08!45;UBERON:0002416!2.13e-08!45;UBERON:0000481!2.26e-08!347;UBERON:0000914!2.33e-08!83;UBERON:0002329!2.33e-08!83;UBERON:0003077!2.33e-08!83;UBERON:0003059!2.33e-08!83;UBERON:0007282!2.33e-08!83;UBERON:0009618!2.33e-08!83;UBERON:0007285!2.33e-08!83;UBERON:0002097!1.16e-07!40;UBERON:0004921!1.57e-07!129;UBERON:0004185!1.57e-07!129;UBERON:0000468!2.67e-07!659;UBERON:0005256!2.74e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.58e-08;6!UBERON:0002358;3.58e-08;6!UBERON:0003684;3.58e-08;6!UBERON:0001178;3.58e-08;6!UBERON:0002097;1.09e-07;41!UBERON:0005409;4.81e-07;22!UBERON:0000160;6.97e-07;17!UBERON:0001155;7.08e-07;9!UBERON:0002073;8.75e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.18e-12,99;UBERON:0002199,6.56e-11,46;UBERON:0002416,6.56e-11,46;UBERON:0002097,4.15e-10,41;UBERON:0003688,3.39e-08,6;UBERON:0002358,3.39e-08,6;UBERON:0003684,3.39e-08,6;UBERON:0001178,3.39e-08,6;UBERON:0004923,3.66e-07,66;UBERON:0000160,7.13e-07,17;UBERON:0002100,7.60e-07,199;UBERON:0001155,8.18e-07,9;UBERON:0002073,9.70e-07,5;UBERON:0005086,9.70e-07,5 | |||
|phase1_expression=11.2640595147745,6.20891519283851,8.88012745804618,19.0139266870948,8.04529969969118,5.23403114460221,2.53299878168311,1.89515962028049,0,0.491467873003018,0,0,0,0.123766352960047,0.994192127183747,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,1.83884244895785,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,1.50401373190767,2.462390822334,0,0,0.189069634328136,0,0.175669571386252,1.44076983047484,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.35576626268671,2.34304428935269,3.22263453687318,1.52054421143703,5.36936526605973,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,1.98788780678127,2.5326102332916,0.132409180813219,2.86836620748814,1.06400514659507,1.12135520028461,0,0.24666754841716,0,0,0.490385709340376,1.36221684880438,1.15235184896,0,0,0.570471821544449,0.149448680551801,0.822041490506354,5.50368010851647,2.52811452064047,1.63323337003915,0.491337269247072,3.61640234115179,0,3.95627086845691,0,0.718618141816238,1.34668891163253,1.50142223846357,0.554128230968366,1.75591048352335,4.29082914118628,0.751190294532984,0.453728732640084,0.89694817844431,1.92201649936711,1.69545520927649,3.90118424909723,4.01904864029912,4.12224864073007,8.00302482225836,5.73839529620305,4.67697624773753,3.02920529092937,5.06274442532646,2.26304479546337,4.61512470271599,1.10827308050404,1.86516651541536,0.773043412653187,1.09098448236334,0.286804595389004,0,0,0.116193942869518,0.10366105501537,0,0,3.12899064659632,7.71889125831462,4.14404764057442,24.6115001856949,8.66255378003503,0,0,0,0,0,0,0,0,0,0,0,0,0,30.4212083572394,11.7939266001315,41.9460833743797,0,15.8655085720616,0.343135620597051,0,1.1240175325762,0,0.185176890317059,0,2.07986957055916,0,0.231860809950154,0.70445216541493,4.76409277611544,0.925971025153221,6.65889532821094,0,0,0,0,0,0.93733833986777,7.39121364074982,2.41017665312057,0,0,0.383382679165211,0,0,0,0,0,0,0,0,3.4214489204541,0.411309970813294,0,0,0.112131084345361,0,0.4400297149257,1.16344544182,3.57656445851882,0,3.19125739901845,10.4007436911366,1.54324424557285,2.83698264046557,0.266422179016099,1.00084595560703,0.542621605391443,0.823240336780769,0,0.355391948742546,1.58390374586686,0,0,0,0,0,0,0.239624855491583,4.59447743336456,2.85273810081437,9.12122232005749,4.9314317412092,22.5616813682268,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,4.00136416847742,0,1.66376689224646,3.03329280955175,23.9707670851581,0.234282829985426,10.2321673907424,0,1.03473071292505,0.664225598535437,0.368738337083406,1.73767228936166,0.587403472388222,1.02943027143257,0,0,0,0,0,0,5.45837177201309,15.6531212753824,10.9457436828899,5.89440086576224,17.3980464682679,4.82561763430822,5.93672265779964,1.69630663182921,0.177561725313127,0.328508624055237,0,0.232420756919918,2.53804844142407,0,0,1.7222167224691,2.1850940160806,1.04899531967539,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0,12.3649213977267,0.915694648183434,0.495056999523528,0.574265537996172,1.30012049207304,1.6068392984416,0.580024309752732,0.154048617114644,0.767518373630648,1.24052915236078,1.28904293841928,0.145016693914229,0.93749290157711,0.445160178233687,0.991709492165869,2.11409074101617,0.765676274967505,2.52894452138875,0.464845549297286,2.20368642781448,0,0,0,0,0,0.143124886741991,3.72158369359667,4.42931194606216,1.14378116354295,0,2.99557291623744,0.318203247925937,0,1.61885211824983,1.37268514868027,0.942499218765491,0,0,0,0,0.243713489631284,0,0.136499911407986,6.6460553018245,1.13008116620243,0,0.66343897524122,0,0,1.31178950409327,0.202910376962704,0,0.281695602532241,5.73645408816206,2.75097314836739,0,0.354761064070598,1.47775344708365,0,0,0.349934720244983,0.192444225451024,0,0,11.6738312963206,0.43050537267123,0,0.443430153536676,3.67557440331135,0,0,0,0,0,0,0,0,0,8.66231869737023,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.98849729306303,0.293016358543788,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,1.10513566212459,0,0,0,0,0.808815160325942,0,0,0.789147245095469,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0,0,0.153900517007594,0,2.53620294826866,0.987334088507493,0,1.27600463892768,1.64875668123352,1.5991043280559,0,0.156980256395025,0,0,0,0,0,0,0,0.979396848954886,13.1458356433565,15.7963707011727,4.97630965539252,1.32686346755009,18.3309043480088,0,0,0,0,2.40773294189637,0,0,0,1.94224303627274,0.394584402849391,4.83962864194656,0,0.126373159256976,0,0,5.98188485436467,1.65495977937749,3.45326210247948,4.77889719091835,8.82289592692358,0,0,0,0,0.17472666824203,0,0,0,0,0.581934098930517,0,0.677942222341597,0,0,0,0,0,0.213452994739353,0.19980960958213,25.3599134191227,0,16.1299297990247,0,0,1.64985824231757,1.63085047288337,1.35983700206033,0,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| ||
|short_description=p2@SLC38A4 | |short_description=p2@SLC38A4 | ||
}} | }} |
Latest revision as of 11:58, 18 September 2015
Short description: | p2@SLC38A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC38A4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000266579, ENST00000395426, ENST00000447411, ENST00000547477, NM_001143824, NM_018018, uc001rpi.2, uc001rpj.2, uc009zkl.2_5end |
EntrezGene: | SLC38A4 |
HGNC: | 14679 |
UniProt: | Q969I6E7EMG3F8VQY9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.29e-12 | 76 |
skin fibroblast | 1.03e-09 | 23 |
fat cell | 9.34e-07 | 15 |
hair follicle cell | 9.70e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
surface structure | 4.18e-12 | 99 |
integument | 6.56e-11 | 46 |
integumental system | 6.56e-11 | 46 |
skin of body | 4.15e-10 | 41 |
omentum | 3.39e-08 | 6 |
peritoneum | 3.39e-08 | 6 |
abdominal cavity | 3.39e-08 | 6 |
visceral peritoneum | 3.39e-08 | 6 |
organ component layer | 3.66e-07 | 66 |
intestine | 7.13e-07 | 17 |
trunk | 7.60e-07 | 199 |
colon | 8.18e-07 | 9 |
hair follicle | 9.70e-07 | 5 |
hair follicle placode | 9.70e-07 | 5 |