FFCP PHASE1:Hg19::chr12:47219918..47219922,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55089 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14679 | |||
|TSSclassifier=strong | |||
|UniProt=Q969I6 | |||
|association_with_transcript=-138bp_to_ENST00000266579,ENST00000447411,NM_001143824,NM_018018,uc001rpi.2,uc001rpj.2,uc009zkl.2_5end | |||
|cluster_id=chr12:47219918..47219922,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_SLC38A4_5end | |||
|id=chr12:47219918..47219922,- | |||
|ontology_enrichment_celltype=CL:0000181!3.62e-11!12;CL:0000417!3.62e-11!12;CL:0000668!3.62e-11!12;CL:0000414!3.62e-11!12;CL:0000412!3.62e-11!12;CL:0000182!3.62e-11!12;CL:0000313!3.83e-09!1;CL:0000223!1.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.53e-17;12!CL:0002563;9.63e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.46e-17,12;CL:0002563,9.63e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2152!3.83e-09!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!1.22e-16!23;UBERON:0002107!4.53e-15!19;UBERON:0006925!4.53e-15!19;UBERON:0008836!4.53e-15!19;UBERON:0009856!1.25e-14!26;UBERON:0001155!1.39e-14!9;UBERON:0008835!5.97e-13!22;UBERON:0003894!5.97e-13!22;UBERON:0002365!4.15e-12!31;UBERON:0002330!4.15e-12!31;UBERON:0000059!5.73e-12!11;UBERON:0007499!2.44e-11!25;UBERON:0009497!2.44e-11!25;UBERON:0000015!2.44e-11!25;UBERON:0002423!2.44e-11!25;UBERON:0006235!2.44e-11!25;UBERON:0004161!2.44e-11!25;UBERON:0005057!6.97e-11!26;UBERON:0004921!1.15e-09!129;UBERON:0004185!1.15e-09!129;UBERON:0001154!1.99e-09!1;UBERON:0001153!1.99e-09!1;UBERON:0004911!3.83e-09!1;UBERON:0003929!1.40e-08!54;UBERON:0002368!5.93e-08!35;UBERON:0002530!1.01e-07!59;UBERON:0001007!1.23e-07!155;UBERON:0001555!1.23e-07!155;UBERON:0007026!1.23e-07!155;UBERON:0005409!1.26e-07!35;UBERON:0000160!4.45e-07!27;UBERON:0004119!8.42e-07!169;UBERON:0000925!8.42e-07!169;UBERON:0006595!8.42e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.29e-19;19!UBERON:0006925;4.29e-19;19!UBERON:0002423;1.26e-14;25!UBERON:0002365;2.93e-12;31!UBERON:0002330;2.93e-12;31!UBERON:0002368;6.22e-10;33!UBERON:0000949;2.19e-08;43!UBERON:0001007;1.85e-07;81!UBERON:0001242;9.63e-07;4!UBERON:0001262;9.63e-07;4!UBERON:0004786;9.63e-07;4!UBERON:0004808;9.63e-07;4!UBERON:0001277;9.63e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.19e-19,19;UBERON:0006925,4.19e-19,19;UBERON:0008836,4.19e-19,19;UBERON:0008835,1.45e-16,22;UBERON:0003894,1.45e-16,22;UBERON:0009854,7.24e-16,23;UBERON:0007499,1.24e-14,25;UBERON:0009497,1.24e-14,25;UBERON:0000015,1.24e-14,25;UBERON:0002423,1.24e-14,25;UBERON:0006235,1.24e-14,25;UBERON:0004161,1.24e-14,25;UBERON:0009856,4.35e-14,26;UBERON:0002365,6.96e-12,31;UBERON:0002330,6.96e-12,31;UBERON:0002368,1.43e-10,35;UBERON:0003929,1.96e-10,54;UBERON:0000949,2.67e-08,45;UBERON:0005172,5.73e-07,54;UBERON:0005173,5.73e-07,54;UBERON:0005911,6.59e-07,82;UBERON:0001242,9.63e-07,4;UBERON:0001262,9.63e-07,4;UBERON:0004786,9.63e-07,4;UBERON:0004808,9.63e-07,4;UBERON:0001277,9.63e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,40.5616111429859,3.9313088667105,30.1302852407516,0,2.82873408649161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2283155421506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,3.05515072466813,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864542502924636,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,27.4052676978014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@SLC38A4 | |||
}} |
Latest revision as of 11:58, 18 September 2015
Short description: | p4@SLC38A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC38A4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -138bp_to_ENST00000266579, ENST00000447411, NM_001143824, NM_018018, uc001rpi.2, uc001rpj.2, uc009zkl.2_5end |
EntrezGene: | SLC38A4 |
HGNC: | 14679 |
UniProt: | Q969I6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.46e-17 | 12 |
intestinal epithelial cell | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 4.19e-19 | 19 |
digestive gland | 4.19e-19 | 19 |
liver bud | 4.19e-19 | 19 |
hepatic diverticulum | 1.45e-16 | 22 |
liver primordium | 1.45e-16 | 22 |
digestive tract diverticulum | 7.24e-16 | 23 |
epithelial sac | 1.24e-14 | 25 |
epithelium of foregut-midgut junction | 1.24e-14 | 25 |
anatomical boundary | 1.24e-14 | 25 |
hepatobiliary system | 1.24e-14 | 25 |
foregut-midgut junction | 1.24e-14 | 25 |
septum transversum | 1.24e-14 | 25 |
sac | 4.35e-14 | 26 |
exocrine gland | 6.96e-12 | 31 |
exocrine system | 6.96e-12 | 31 |
endocrine gland | 1.43e-10 | 35 |
gut epithelium | 1.96e-10 | 54 |
endocrine system | 2.67e-08 | 45 |
abdomen element | 5.73e-07 | 54 |
abdominal segment element | 5.73e-07 | 54 |
endo-epithelium | 6.59e-07 | 82 |
intestinal mucosa | 9.63e-07 | 4 |
wall of intestine | 9.63e-07 | 4 |
gastrointestinal system mucosa | 9.63e-07 | 4 |
gastrointestinal system epithelium | 9.63e-07 | 4 |
intestinal epithelium | 9.63e-07 | 4 |