FFCP PHASE1:Hg19::chr2:77749342..77749350,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80059 | |EntrezGene=80059 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19411 | |HGNC=19411 | ||
|TSSclassifier=strong | |||
|UniProt=Q4KMX1 | |UniProt=Q4KMX1 | ||
|association_with_transcript=-6bp_to_ENST00000409282_5end | |association_with_transcript=-6bp_to_ENST00000409282_5end | ||
|cluster_id=chr2:77749342..77749350,- | |||
|coexpression_cluster_id=C156 | |||
|description=CAGE_peak_7_at_LRRTM4_5end | |description=CAGE_peak_7_at_LRRTM4_5end | ||
|id=chr2:77749342..77749350,- | |id=chr2:77749342..77749350,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000946;6.62e-41;1!CL:0000786;6.62e-41;1!CL:0000047;5.15e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,6.62e-41,1;CL:0000786,6.62e-41,1;CL:0000980,6.62e-41,1;CL:0000785,3.11e-21,2;CL:0000955,3.11e-21,2;CL:0000818,3.11e-21,2;CL:0000954,3.11e-21,2;CL:0000816,3.11e-21,2;CL:0000817,1.22e-14,3 | |||
|ontology_enrichment_development_v019=CL:0000954;3.11e-21;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!5.43e-62!34;UBERON:0003528!5.43e-62!34;UBERON:0001893!1.30e-56!34;UBERON:0001869!3.64e-55!32;UBERON:0002780!3.99e-55!41;UBERON:0001890!3.99e-55!41;UBERON:0006240!3.99e-55!41;UBERON:0003080!1.07e-53!42;UBERON:0002791!2.00e-53!33;UBERON:0001049!3.30e-52!57;UBERON:0005068!3.30e-52!57;UBERON:0006241!3.30e-52!57;UBERON:0007135!3.30e-52!57;UBERON:0002616!3.13e-50!59;UBERON:0002619!2.32e-48!22;UBERON:0000955!1.64e-44!69;UBERON:0006238!1.64e-44!69;UBERON:0005743!7.79e-43!86;UBERON:0001017!2.16e-42!82;UBERON:0000956!2.71e-42!25;UBERON:0000203!2.71e-42!25;UBERON:0002346!2.61e-41!90;UBERON:0001950!4.32e-41!20;UBERON:0003075!1.57e-40!86;UBERON:0007284!1.57e-40!86;UBERON:0003056!2.55e-38!61;UBERON:0000073!3.93e-38!94;UBERON:0001016!3.93e-38!94;UBERON:0007023!1.24e-30!115;UBERON:0000153!3.83e-26!129;UBERON:0007811!3.83e-26!129;UBERON:0000033!9.27e-26!123;UBERON:0000924!6.04e-22!173;UBERON:0006601!6.04e-22!173;UBERON:0002308!4.76e-21!9;UBERON:0000125!4.76e-21!9;UBERON:0004121!4.96e-21!169;UBERON:0000200!2.46e-17!6;UBERON:0000369!1.88e-16!4;UBERON:0002435!1.88e-16!4;UBERON:0000204!1.88e-16!4;UBERON:0010082!1.88e-16!4;UBERON:0002420!1.81e-15!9;UBERON:0007245!1.81e-15!9;UBERON:0010009!1.81e-15!9;UBERON:0010011!1.81e-15!9;UBERON:0000454!1.81e-15!9;UBERON:0000025!6.46e-15!194;UBERON:0009663!3.27e-14!7;UBERON:0002021!1.12e-13!5;UBERON:0002771!1.48e-13!3;UBERON:0001872!1.77e-13!5;UBERON:0000349!2.14e-13!5;UBERON:0001871!7.63e-13!7;UBERON:0005383!8.35e-13!3;UBERON:0005382!8.35e-13!3;UBERON:0006331!1.25e-12!3;UBERON:0000988!2.02e-12!3;UBERON:0004111!1.61e-11!241;UBERON:0000475!1.15e-09!365;UBERON:0000483!1.44e-09!309;UBERON:0001954!1.47e-09!2;UBERON:0003022!1.47e-09!2;UBERON:0002421!1.47e-09!2;UBERON:0002600!1.47e-09!2;UBERON:0000119!2.13e-09!312;UBERON:0000477!2.53e-09!286;UBERON:0001873!3.38e-09!2;UBERON:0010122!3.38e-09!2;UBERON:0002148!4.51e-09!2;UBERON:0009662!4.51e-09!2;UBERON:0000064!1.07e-08!219;UBERON:0002298!4.92e-08!8;UBERON:0000481!1.24e-07!347;UBERON:0002680!4.40e-07!9;UBERON:0001895!4.40e-07!9;UBERON:0010092!4.40e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;3.26e-11;4!UBERON:0000923;3.26e-11;4!UBERON:0010316;3.26e-11;4!UBERON:0005291;3.26e-11;4!UBERON:0001872;3.10e-09;5!UBERON:0002021;3.10e-09;5!UBERON:0002050;3.10e-09;5!UBERON:0005423;3.10e-09;5!UBERON:0001950;1.48e-08;20!UBERON:0002619;6.75e-08;22!UBERON:0000956;4.28e-07;25!UBERON:0000203;4.28e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.74e-09,5;UBERON:0001872,3.22e-09,5;UBERON:0001950,1.42e-08,20;UBERON:0002619,6.52e-08,22;UBERON:0000956,4.15e-07,25;UBERON:0000203,4.15e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0.3755727921195,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0,0.205116364240755,0.504143392443436,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.126831620387814,1.09394961803644,0,0,0,0,0,0,0,0.227662191351298,0,4.49412551467539,0,0.0679697329768317,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.203974470572744,0.436350690340377,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0.3755727921195,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0,0.205116364240755,0.504143392443436,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.126831620387814,1.09394961803644,0,0,0,0,0,0,0,0.227662191351298,0,4.49412551467539,0,0.0679697329768317,0.328863867814245,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.203974470572744,0.436350690340377,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p7@LRRTM4 | |short_description=p7@LRRTM4 | ||
}} | }} |
Latest revision as of 13:19, 18 September 2015
Short description: | p7@LRRTM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LRRTM4_5end |
Coexpression cluster: | C156_plasma_splenic_hereditary_B_large_xeroderma_b |
Association with transcript: | -6bp_to_ENST00000409282_5end |
EntrezGene: | LRRTM4 |
HGNC: | 19411 |
UniProt: | Q4KMX1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 6.62e-41 | 1 |
plasma cell | 6.62e-41 | 1 |
plasmablast | 6.62e-41 | 1 |
mature B cell | 3.11e-21 | 2 |
pre-B-II cell | 3.11e-21 | 2 |
transitional stage B cell | 3.11e-21 | 2 |
small pre-B-II cell | 3.11e-21 | 2 |
immature B cell | 3.11e-21 | 2 |
precursor B cell | 1.22e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.74e-09 | 5 |
parietal lobe | 3.22e-09 | 5 |
neocortex | 1.42e-08 | 20 |
regional part of cerebral cortex | 6.52e-08 | 22 |
cerebral cortex | 4.15e-07 | 25 |
pallium | 4.15e-07 | 25 |