FFCP PHASE1:Hg19::chr1:53378822..53378835,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55268 | |EntrezGene=55268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23408 | |HGNC=23408 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=180bp_to_ENST00000493896_5end | |association_with_transcript=180bp_to_ENST00000493896_5end | ||
|cluster_id=chr1:53378822..53378835,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_ECHDC2_5end | |description=CAGE_peak_4_at_ECHDC2_5end | ||
|id=chr1:53378822..53378835,- | |id=chr1:53378822..53378835,- | ||
|ontology_enrichment_celltype=CL:0000181!4.32e-09!12;CL:0000417!4.32e-09!12;CL:0000668!4.32e-09!12;CL:0000414!4.32e-09!12;CL:0000412!4.32e-09!12;CL:0000182!4.32e-09!12 | |ontology_enrichment_celltype=CL:0000181!4.32e-09!12;CL:0000417!4.32e-09!12;CL:0000668!4.32e-09!12;CL:0000414!4.32e-09!12;CL:0000412!4.32e-09!12;CL:0000182!4.32e-09!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.52e-25;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.52e-25,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002336!3.85e-12!1;UBERON:0001018!3.85e-12!1;UBERON:0002473!3.85e-12!1;UBERON:0005340!3.85e-12!1;UBERON:0002316!3.85e-12!1;UBERON:0003544!3.85e-12!1;UBERON:0001020!3.85e-12!1;UBERON:0005970!3.85e-12!1;UBERON:0002437!3.85e-12!1;UBERON:0001882!4.81e-12!1;UBERON:0005403!4.81e-12!1;UBERON:0002107!8.66e-10!19;UBERON:0006925!8.66e-10!19;UBERON:0008836!8.66e-10!19;UBERON:0008835!1.77e-08!22;UBERON:0003894!1.77e-08!22;UBERON:0009854!4.07e-08!23;UBERON:0007499!1.77e-07!25;UBERON:0009497!1.77e-07!25;UBERON:0000015!1.77e-07!25;UBERON:0002423!1.77e-07!25;UBERON:0006235!1.77e-07!25;UBERON:0004161!1.77e-07!25;UBERON:0005057!3.39e-07!26;UBERON:0009856!3.39e-07!26 | |ontology_enrichment_uberon=UBERON:0002336!3.85e-12!1;UBERON:0001018!3.85e-12!1;UBERON:0002473!3.85e-12!1;UBERON:0005340!3.85e-12!1;UBERON:0002316!3.85e-12!1;UBERON:0003544!3.85e-12!1;UBERON:0001020!3.85e-12!1;UBERON:0005970!3.85e-12!1;UBERON:0002437!3.85e-12!1;UBERON:0001882!4.81e-12!1;UBERON:0005403!4.81e-12!1;UBERON:0002107!8.66e-10!19;UBERON:0006925!8.66e-10!19;UBERON:0008836!8.66e-10!19;UBERON:0008835!1.77e-08!22;UBERON:0003894!1.77e-08!22;UBERON:0009854!4.07e-08!23;UBERON:0007499!1.77e-07!25;UBERON:0009497!1.77e-07!25;UBERON:0000015!1.77e-07!25;UBERON:0002423!1.77e-07!25;UBERON:0006235!1.77e-07!25;UBERON:0004161!1.77e-07!25;UBERON:0005057!3.39e-07!26;UBERON:0009856!3.39e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.07e-28;19!UBERON:0006925;4.07e-28;19!UBERON:0002423;1.50e-21;25!UBERON:0002365;4.47e-18;31!UBERON:0002330;4.47e-18;31!UBERON:0002368;1.44e-14;33!UBERON:0000949;3.13e-12;43!UBERON:0005172;4.97e-09;52!UBERON:0005173;4.97e-09;52!UBERON:0002530;8.00e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.07e-28,19;UBERON:0006925,4.07e-28,19;UBERON:0008836,4.07e-28,19;UBERON:0008835,2.18e-24,22;UBERON:0003894,2.18e-24,22;UBERON:0009854,2.32e-23,23;UBERON:0007499,1.50e-21,25;UBERON:0009497,1.50e-21,25;UBERON:0000015,1.50e-21,25;UBERON:0002423,1.50e-21,25;UBERON:0006235,1.50e-21,25;UBERON:0004161,1.50e-21,25;UBERON:0009856,9.49e-21,26;UBERON:0002365,1.63e-17,31;UBERON:0002330,1.63e-17,31;UBERON:0002368,1.37e-15,35;UBERON:0000949,2.91e-12,45;UBERON:0003929,2.58e-10,54;UBERON:0005172,2.58e-10,54;UBERON:0005173,2.58e-10,54;UBERON:0002530,1.74e-09,59;UBERON:0002417,2.45e-09,60;UBERON:0000916,2.45e-09,60;UBERON:0005911,5.81e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,3.9313088667105,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.7416534576694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7827997879806,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27588041241097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,3.9313088667105,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.7416534576694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7827997879806,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27588041241097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@ECHDC2 | |short_description=p4@ECHDC2 | ||
}} | }} |
Latest revision as of 13:21, 18 September 2015
Short description: | p4@ECHDC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ECHDC2_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 180bp_to_ENST00000493896_5end |
EntrezGene: | ECHDC2 |
HGNC: | 23408 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.52e-25 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 4.07e-28 | 19 |
digestive gland | 4.07e-28 | 19 |
liver bud | 4.07e-28 | 19 |
hepatic diverticulum | 2.18e-24 | 22 |
liver primordium | 2.18e-24 | 22 |
digestive tract diverticulum | 2.32e-23 | 23 |
epithelial sac | 1.50e-21 | 25 |
epithelium of foregut-midgut junction | 1.50e-21 | 25 |
anatomical boundary | 1.50e-21 | 25 |
hepatobiliary system | 1.50e-21 | 25 |
foregut-midgut junction | 1.50e-21 | 25 |
septum transversum | 1.50e-21 | 25 |
sac | 9.49e-21 | 26 |
exocrine gland | 1.63e-17 | 31 |
exocrine system | 1.63e-17 | 31 |
endocrine gland | 1.37e-15 | 35 |
endocrine system | 2.91e-12 | 45 |
gut epithelium | 2.58e-10 | 54 |
abdomen element | 2.58e-10 | 54 |
abdominal segment element | 2.58e-10 | 54 |
gland | 1.74e-09 | 59 |
abdominal segment of trunk | 2.45e-09 | 60 |
abdomen | 2.45e-09 | 60 |
endo-epithelium | 5.81e-07 | 82 |