FFCP PHASE1:Hg19::chr17:13505198..13505209,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:13505198..13505209,- to FFCP PHASE1:Hg19::chr17:13505198..13505209,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9955 | |EntrezGene=9955 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5196 | |HGNC=5196 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y663 | |UniProt=Q9Y663 | ||
|association_with_transcript=34bp_to_ENST00000284110,NM_006042,uc002gob.1_5end | |||
|cluster_id=chr17:13505198..13505209,- | |||
|description=CAGE_peak_2_at_HS3ST3A1_5end | |||
|id=chr17:13505198..13505209,- | |||
|ontology_enrichment_celltype=CL:0000055!2.26e-21!180;CL:0000057!7.47e-19!75;CL:0002620!3.42e-17!23;CL:0002334!4.55e-09!12;CL:1000507!7.20e-08!12;CL:1000494!7.20e-08!12;CL:1000449!1.18e-07!16;CL:0002551!5.36e-07!6;CL:0000144!6.67e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.91e-12;23!CL:0000650;3.02e-10;2!CL:1000500;3.02e-10;2!CL:1000618;3.02e-10;2!CL:1001318;3.02e-10;2!CL:0002173;3.02e-10;2!CL:0002570;1.90e-09;8!CL:0000346;4.19e-07;3!CL:1000428;4.19e-07;3!CL:0002580;4.19e-07;3!CL:0000057;4.83e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.47e-12,23;CL:0000057,2.28e-10,76;CL:0000650,2.29e-10,2;CL:1000500,2.29e-10,2;CL:1000618,2.29e-10,2;CL:1001318,2.29e-10,2;CL:0002173,2.29e-10,2;CL:0002570,1.79e-09,8;CL:0002580,2.89e-07,3;CL:0000346,3.83e-07,3;CL:1000428,3.83e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!2.39e-13!45;UBERON:0002416!2.39e-13!45;UBERON:0003102!1.15e-12!95;UBERON:0002097!5.34e-12!40;UBERON:0000475!2.71e-11!365;UBERON:0002067!7.65e-10!9;UBERON:0004016!7.65e-10!9;UBERON:0010083!7.65e-10!9;UBERON:0009773!7.20e-08!12;UBERON:0001231!7.20e-08!12;UBERON:0004810!7.20e-08!12;UBERON:0004211!1.18e-07!16;UBERON:0001285!1.18e-07!16;UBERON:0007684!1.18e-07!16;UBERON:0003220!1.18e-07!16;UBERON:0004208!1.18e-07!16;UBERON:0005256!4.58e-07!143;UBERON:0006555!5.38e-07!17;UBERON:0005103!5.38e-07!17;UBERON:0000083!5.38e-07!17;UBERON:0009201!5.38e-07!17;UBERON:0004819!5.38e-07!17;UBERON:0006553!5.38e-07!17;UBERON:0003074!5.38e-07!17;UBERON:0003060!5.38e-07!17;UBERON:0003887!8.40e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003891;5.20e-11;4!UBERON:0003567;3.02e-10;2!UBERON:0003838;3.02e-10;2!UBERON:0003586;3.02e-10;2!UBERON:0005169;3.02e-10;2!UBERON:0002321;3.02e-10;2!UBERON:0005215;3.02e-10;2!UBERON:0002303;3.02e-10;2!UBERON:0002319;3.02e-10;2!UBERON:0002097;1.75e-08;41!UBERON:0002067;2.09e-08;9!UBERON:0001013;3.14e-08;14!UBERON:0003102;7.40e-08;50!UBERON:0002199;2.47e-07;46!UBERON:0002416;2.47e-07;46!UBERON:0000412;4.19e-07;3!UBERON:0001992;4.19e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.20e-12,46;UBERON:0002416,3.20e-12,46;UBERON:0003891,6.34e-11,4;UBERON:0003567,2.29e-10,2;UBERON:0003838,2.29e-10,2;UBERON:0003586,2.29e-10,2;UBERON:0005169,2.29e-10,2;UBERON:0002321,2.29e-10,2;UBERON:0005215,2.29e-10,2;UBERON:0002303,2.29e-10,2;UBERON:0002319,2.29e-10,2;UBERON:0002097,1.59e-09,41;UBERON:0002067,2.51e-08,9;UBERON:0004016,2.51e-08,9;UBERON:0010083,2.51e-08,9;UBERON:0001013,2.91e-08,14;UBERON:0000412,3.83e-07,3;UBERON:0001992,3.83e-07,3 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,3.79031924056099,0,0.737201809504527,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.85870796139317,1.23186982565596,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0.795285947051099,0.486634870302636,0,0.443458794925128,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0.937285727335186,0.936480230490962,1.1409436430889,1.19558944441441,0.822041490506354,0.485618833104395,0.842704840213491,0.204154171254893,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0.718618141816238,0,0.375355559615893,0.831192346452549,0.438977620880838,0,0.150238058906597,0,0.89694817844431,0.640672166455702,0.635795703478686,3.00091096084402,1.03052529238439,0.772921620136887,0.558350568994769,3.37552664482532,1.16924406193438,1.26216887122057,0.184099797284599,0.484938170456436,1.77504796258307,0.503760491138201,0.339121184620975,0,0,0,0,0,0.232387885739037,0,0,0,1.56449532329816,0.643240938192885,1.38134921352481,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.690605505112,0,0,0,0,0.532844358032199,0,0,0,0.65147236858747,0,0.791951872933429,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0,0,0,0.24538298343828,0,0,0,0,0.315404830067869,0.234282829985426,0,0,0,0,0.368738337083406,0.347534457872331,0,0,0,0,0,0,0,0,0.248107807818777,1.53461973288062,1.68396056659844,0.128139149255701,0.511707249066704,0.321707842287215,0,1.3878872442239,0.887808626565635,0.821271560138091,1.03850885836724,0.697262270759755,0,0.200506470303285,0.0920809889358963,0,0.546273504020151,0.131124414959424,0.451199612907412,0.693138033939733,0.784349769176855,2.92278449306521,0.73886140225013,0,0,0.431831832204279,0,1.62567862526312,1.50506932156456,0,0.831076008928724,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0,2.1060976908219,1.98022799809411,0,0,0,0.096670718292122,0.616194468458578,0.614014698904518,0.275673144969061,0,0.145016693914229,0.426133137080504,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0.316379424718726,0.953150969619124,1.02359116524534,0.42793898803392,0.95460974377781,0,0.539617372749944,0.823611089208164,0.353437207037059,0,0,0,1.95053495635836,0,0,0.272999822815972,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0.7133421029625,2.12856638442359,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556543525114529,0.329607748453519,0,0,0,0,0.613612095012929,0,0,0.718946809178615,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.797594390929008,0.46112780877612,0,0.217294743844016,0,0.183195186803725,0,0,0.156980256395025,0,0,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751617097072463,0.103688191397247,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,1.64450309576101,0.794858446811959,0,0,0,0,0,0,0,0,0,0,0,1.63085047288337,3.03348254305766,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0.326587360109409,2.39460383124975,0,3.23737241392301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0.0620964029413835,0,0.37494122388632,0,0,0.470531639396343,0,0.144921028610825,1.19403842309499,1.63599316893057,1.10961172300523,0.568209015825267,0.251567901752575,0,0,0,0.777186002913902,0.147855149989634,0.63718706865481,0,0.776314784381297,0.829412415681711,1.86089200190596,0,0.901545653983311,0,1.62748293281865,0,0.107410557042488,0.464033759878494,0,0,0,0.336749488765919,0,0.770479321629213,0,0,0.226705925512272,0,0.97894681802587,0.179088841081487,0.926404341482917,0.219284049578707,1.06013487567529,0.192914038270915,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29389773676018,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0.596748666348824,0.0752103283492573,2.42046082444224,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235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| ||
|short_description=p2@HS3ST3A1 | |||
}} | }} |
Latest revision as of 16:50, 18 September 2015
Short description: | p2@HS3ST3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HS3ST3A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 34bp_to_ENST00000284110, NM_006042, uc002gob.1_5end |
EntrezGene: | HS3ST3A1 |
HGNC: | 5196 |
UniProt: | Q9Y663 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.47e-12 | 23 |
fibroblast | 2.28e-10 | 76 |
mesangial cell | 2.29e-10 | 2 |
kidney interstitial cell | 2.29e-10 | 2 |
juxtaglomerular complex cell | 2.29e-10 | 2 |
renal interstitial pericyte | 2.29e-10 | 2 |
extraglomerular mesangial cell | 2.29e-10 | 2 |
mesenchymal stem cell of adipose | 1.79e-09 | 8 |
preadipocyte of the breast | 2.89e-07 | 3 |
hair follicle dermal papilla cell | 3.83e-07 | 3 |
stem cell of epidermis | 3.83e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
integument | 3.20e-12 | 46 |
integumental system | 3.20e-12 | 46 |
stroma | 6.34e-11 | 4 |
abdomen connective tissue | 2.29e-10 | 2 |
abdominal segment connective tissue | 2.29e-10 | 2 |
trunk connective tissue | 2.29e-10 | 2 |
interstitial tissue | 2.29e-10 | 2 |
extraglomerular mesangium | 2.29e-10 | 2 |
kidney interstitium | 2.29e-10 | 2 |
juxtaglomerular apparatus | 2.29e-10 | 2 |
mesangium | 2.29e-10 | 2 |
skin of body | 1.59e-09 | 41 |
dermis | 2.51e-08 | 9 |
dermatome | 2.51e-08 | 9 |
future dermis | 2.51e-08 | 9 |
adipose tissue | 2.91e-08 | 14 |
dermal papilla | 3.83e-07 | 3 |
papillary layer of dermis | 3.83e-07 | 3 |