FFCP PHASE1:Hg19::chr2:182543783..182543813,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4760 | |EntrezGene=4760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7762 | |HGNC=7762 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-195bp_to_AB385071,CU679237,DQ891560,DQ894747_5end | |association_with_transcript=-195bp_to_AB385071,CU679237,DQ891560,DQ894747_5end | ||
|cluster_id=chr2:182543783..182543813,- | |||
|coexpression_cluster_id=C85 | |coexpression_cluster_id=C85 | ||
|description=CAGE_peak_6_at_NEUROD1_5end | |description=CAGE_peak_6_at_NEUROD1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;5.56e-26;2!CL:0000333;2.66e-11;5 | |ontology_enrichment_celltype_v019=CL:0002535;5.56e-26;2!CL:0000333;2.66e-11;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,5.56e-26,2 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.03e-17;3 | |ontology_enrichment_development_v019=UBERON:0003056;1.03e-17;3 | ||
|ontology_enrichment_disease=DOID:5409!5.30e-09!4 | |ontology_enrichment_disease=DOID:5409!5.30e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:5409;1.21e-13;4!DOID:4362;2.94e-11;5!DOID:169;1.22e-09;6!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | |ontology_enrichment_disease_v019=DOID:5409;1.21e-13;4!DOID:4362;2.94e-11;5!DOID:169;1.22e-09;6!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,1.13e-13,4;DOID:4362,2.94e-11,5;DOID:169,1.22e-09,6;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:3905,8.37e-07,9 | |||
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|ontology_enrichment_uberon_v019=UBERON:0006955;5.56e-26;2!UBERON:0004801;5.56e-26;2!UBERON:0000013;2.66e-11;5!UBERON:0002410;2.66e-11;5!UBERON:0000966;3.42e-11;5!UBERON:0005388;3.42e-11;5!UBERON:0001802;3.42e-11;5!UBERON:0000002;1.32e-09;6!UBERON:0001560;1.32e-09;6!UBERON:0000010;7.48e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0006955;5.56e-26;2!UBERON:0004801;5.56e-26;2!UBERON:0000013;2.66e-11;5!UBERON:0002410;2.66e-11;5!UBERON:0000966;3.42e-11;5!UBERON:0005388;3.42e-11;5!UBERON:0001802;3.42e-11;5!UBERON:0000002;1.32e-09;6!UBERON:0001560;1.32e-09;6!UBERON:0000010;7.48e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,5.56e-26,2;UBERON:0004801,5.56e-26,2;UBERON:0000013,2.66e-11,5;UBERON:0002410,2.66e-11,5;UBERON:0000002,1.32e-09,6;UBERON:0001560,1.32e-09,6;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000010,7.48e-07,8 | |||
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|short_description=p6@NEUROD1 | |short_description=p6@NEUROD1 | ||
}} | }} |
Latest revision as of 21:22, 18 September 2015
Short description: | p6@NEUROD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_NEUROD1_5end |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | -195bp_to_AB385071, CU679237, DQ891560, DQ894747_5end |
EntrezGene: | NEUROD1 |
HGNC: | 7762 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 5.56e-26 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 5.56e-26 | 2 |
cervix epithelium | 5.56e-26 | 2 |
sympathetic nervous system | 2.66e-11 | 5 |
autonomic nervous system | 2.66e-11 | 5 |
uterine cervix | 1.32e-09 | 6 |
neck of organ | 1.32e-09 | 6 |
retina | 1.57e-09 | 6 |
photoreceptor array | 1.57e-09 | 6 |
posterior segment of eyeball | 1.57e-09 | 6 |
peripheral nervous system | 7.48e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.13e-13 | 4 |
cervical cancer | 2.94e-11 | 5 |
neuroendocrine tumor | 1.22e-09 | 6 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
lung carcinoma | 8.37e-07 | 9 |