FFCP PHASE1:Hg19::chr12:52636796..52636807,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3855 | |EntrezGene=3855 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6445 | |HGNC=6445 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-61bp_to_ENST00000549127_5end | |association_with_transcript=-61bp_to_ENST00000549127_5end | ||
|cluster_id=chr12:52636796..52636807,+ | |||
|coexpression_cluster_id=C689 | |||
|description=CAGE_peak_26_at_KRT7_5end | |description=CAGE_peak_26_at_KRT7_5end | ||
|id=chr12:52636796..52636807,+ | |id=chr12:52636796..52636807,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.22e-31!254;CL:0002076!2.62e-09!43;CL:0002202!2.29e-08!9;CL:0002632!2.29e-08!9;CL:0000063!7.19e-08!578;CL:0000239!2.70e-07!3;CL:1000615!2.70e-07!3;CL:0002306!2.70e-07!3;CL:0000076!2.71e-07!62;CL:0002368!3.26e-07!13;CL:0000077!7.70e-07!19 | |ontology_enrichment_celltype=CL:0000066!2.22e-31!254;CL:0002076!2.62e-09!43;CL:0002202!2.29e-08!9;CL:0002632!2.29e-08!9;CL:0000063!7.19e-08!578;CL:0000239!2.70e-07!3;CL:1000615!2.70e-07!3;CL:0002306!2.70e-07!3;CL:0000076!2.71e-07!62;CL:0002368!3.26e-07!13;CL:0000077!7.70e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.20e-25;4!CL:0000731;1.20e-25;4!CL:0002536;4.13e-23;2!CL:0002202;6.38e-20;9!CL:0002632;6.38e-20;9!CL:0000307;1.14e-15;3!CL:0002368;6.96e-14;13!CL:0002252;1.56e-12;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.54e-25,4;CL:0000731,1.54e-25,4;CL:0002536,3.12e-23,2;CL:0002202,6.08e-20,9;CL:0002632,6.08e-20,9;CL:0000068,1.42e-15,3;CL:0000069,1.42e-15,3;CL:0000307,1.42e-15,3;CL:0000377,1.42e-15,3;CL:0002368,6.74e-14,13;CL:0002252,1.40e-12,1;CL:0000066,1.95e-10,253 | |||
|ontology_enrichment_development_v019=CL:0000377;1.14e-15;3 | |||
|ontology_enrichment_disease=DOID:305!3.44e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.35e-10!169;UBERON:0000925!1.35e-10!169;UBERON:0006595!1.35e-10!169;UBERON:0005631!2.02e-10!14;UBERON:0000158!2.02e-10!14;UBERON:0008947!2.25e-09!38;UBERON:0003258!2.25e-09!38;UBERON:0005911!1.59e-08!82;UBERON:0005910!2.12e-08!6;UBERON:0007625!2.13e-08!11;UBERON:0000077!6.40e-08!130;UBERON:0000065!1.62e-07!53;UBERON:0001737!1.81e-07!9;UBERON:0000064!2.66e-07!219;UBERON:0006853!2.70e-07!3;UBERON:0007685!2.70e-07!3;UBERON:0004134!2.70e-07!3;UBERON:0003124!3.34e-07!7;UBERON:0000072!3.44e-07!46;UBERON:0000365!3.87e-07!5;UBERON:0005153!7.58e-07!37;UBERON:0001007!8.21e-07!155;UBERON:0001555!8.21e-07!155;UBERON:0007026!8.21e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.17e-20;5!UBERON:0005910;2.51e-17;6!UBERON:0007196;4.57e-12;15!UBERON:0001558;4.57e-12;15!UBERON:0005631;1.24e-10;10!UBERON:0000158;1.24e-10;10!UBERON:0007625;1.19e-09;11!UBERON:0006554;3.13e-09;30!UBERON:0001008;3.13e-09;30!UBERON:0000486;6.00e-09;12!UBERON:0005178;5.05e-08;34!UBERON:0002224;5.05e-08;34!UBERON:0000305;2.91e-07;7!UBERON:0003126;3.14e-07;7!UBERON:0001005;3.14e-07;7!UBERON:0005181;4.03e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.43e-20,5;UBERON:0005910,2.97e-17,6;UBERON:0007196,4.45e-12,15;UBERON:0001558,4.45e-12,15;UBERON:0007625,1.23e-09,11;UBERON:0005178,4.33e-08,34;UBERON:0002224,4.33e-08,34;UBERON:0005181,7.44e-08,35;UBERON:0005631,9.03e-08,14;UBERON:0000158,9.03e-08,14;UBERON:0000305,2.69e-07,7;UBERON:0003126,3.45e-07,7;UBERON:0001005,3.45e-07,7 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,4.66894479352867,20.9340350391728,1.74753097704138,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,1.83884244895785,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0.0945348171640679,1.55210578223795,0.614843499851882,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,2.61656431285521,0,0,0,0.286836620748814,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.723033089650446,0.441175890929576,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,1.44331342025273,0,0.352226082707465,0,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09970290300263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.604780586659361,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0.114814448164607,0,0,0,0,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0,0.764628819135115,1.66215201785745,0.447749509444357,0,0,0,13.1205858279882,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34060455107157,2.17781969722645,0.0941438007767792,2.58303223602738,5.05414427002877,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0.359473404589307,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0.108647371922008,0,0.549585560411174,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0.173559738335131,0,0.34823682632161,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0.391102765469606,0,0,0.39961921916426,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.782982875895635,1.58694147858591,0.231522474323834,0,0.537266523244462,0.308801447160972,0.219284049578707,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.808679663052368,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0.354581522651905,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0.955538938977433,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0.0636471582781649,0.202117188958219,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,4.66894479352867,20.9340350391728,1.74753097704138,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,1.83884244895785,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0.0945348171640679,1.55210578223795,0.614843499851882,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,2.61656431285521,0,0,0,0.286836620748814,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.723033089650446,0.441175890929576,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,1.44331342025273,0,0.352226082707465,0,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09970290300263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.604780586659361,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0.114814448164607,0,0,0,0,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0,0.764628819135115,1.66215201785745,0.447749509444357,0,0,0,13.1205858279882,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34060455107157,2.17781969722645,0.0941438007767792,2.58303223602738,5.05414427002877,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0.359473404589307,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0.108647371922008,0,0.549585560411174,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0.173559738335131,0,0.34823682632161,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0.391102765469606,0,0,0.39961921916426,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.782982875895635,1.58694147858591,0.231522474323834,0,0.537266523244462,0.308801447160972,0.219284049578707,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.808679663052368,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0.354581522651905,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0.955538938977433,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0.0636471582781649,0.202117188958219,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p26@KRT7 | |short_description=p26@KRT7 | ||
}} | }} |
Latest revision as of 22:04, 18 September 2015
Short description: | p26@KRT7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_KRT7_5end |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | -61bp_to_ENST00000549127_5end |
EntrezGene: | KRT7 |
HGNC: | 6445 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.54e-25 | 4 |
urothelial cell | 1.54e-25 | 4 |
amniotic epithelial cell | 3.12e-23 | 2 |
epithelial cell of tracheobronchial tree | 6.08e-20 | 9 |
epithelial cell of lower respiratory tract | 6.08e-20 | 9 |
duct epithelial cell | 1.42e-15 | 3 |
branched duct epithelial cell | 1.42e-15 | 3 |
tracheal epithelial cell | 1.42e-15 | 3 |
tracheoblast | 1.42e-15 | 3 |
respiratory epithelial cell | 6.74e-14 | 13 |
epithelial cell of esophagus | 1.40e-12 | 1 |
epithelial cell | 1.95e-10 | 253 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.43e-20 | 5 |
transitional epithelium | 2.97e-17 | 6 |
tracheobronchial tree | 4.45e-12 | 15 |
lower respiratory tract | 4.45e-12 | 15 |
pigment epithelium of eye | 1.23e-09 | 11 |
thoracic cavity element | 4.33e-08 | 34 |
thoracic cavity | 4.33e-08 | 34 |
thoracic segment organ | 7.44e-08 | 35 |
extraembryonic membrane | 9.03e-08 | 14 |
membranous layer | 9.03e-08 | 14 |
amnion | 2.69e-07 | 7 |
trachea | 3.45e-07 | 7 |
respiratory airway | 3.45e-07 | 7 |