FFCP PHASE1:Hg19::chr7:55583740..55583751,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81552 | |EntrezGene=81552 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34518 | |HGNC=34518 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIM1 | |UniProt=C9JIM1 | ||
|association_with_transcript=18bp_to_ENST00000453256_5end | |association_with_transcript=18bp_to_ENST00000453256_5end | ||
|cluster_id=chr7:55583740..55583751,- | |||
|coexpression_cluster_id=C359 | |coexpression_cluster_id=C359 | ||
|description=CAGE_peak_5_at_VOPP1_5end | |description=CAGE_peak_5_at_VOPP1_5end | ||
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|ontology_enrichment_celltype=CL:0000945!1.97e-37!24;CL:0000826!1.97e-37!24;CL:0000236!9.69e-24!14;CL:0000542!1.34e-22!53;CL:0000051!1.34e-22!53;CL:0000838!3.42e-21!52;CL:0000451!2.59e-13!10;CL:0000738!2.47e-11!140;CL:0000453!2.92e-10!5;CL:0000990!4.68e-10!8;CL:0002087!3.71e-08!119;CL:0002031!3.83e-08!124;CL:0000037!6.26e-08!172;CL:0000566!6.26e-08!172;CL:0002032!2.13e-07!165;CL:0000837!2.13e-07!165;CL:0000988!5.87e-07!182;CL:0000784!6.02e-07!3 | |ontology_enrichment_celltype=CL:0000945!1.97e-37!24;CL:0000826!1.97e-37!24;CL:0000236!9.69e-24!14;CL:0000542!1.34e-22!53;CL:0000051!1.34e-22!53;CL:0000838!3.42e-21!52;CL:0000451!2.59e-13!10;CL:0000738!2.47e-11!140;CL:0000453!2.92e-10!5;CL:0000990!4.68e-10!8;CL:0002087!3.71e-08!119;CL:0002031!3.83e-08!124;CL:0000037!6.26e-08!172;CL:0000566!6.26e-08!172;CL:0002032!2.13e-07!165;CL:0000837!2.13e-07!165;CL:0000988!5.87e-07!182;CL:0000784!6.02e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000945;8.74e-65;24!CL:0000236;3.30e-51;13!CL:0000542;2.13e-23;53!CL:0000784;2.46e-08;3!CL:0000451;3.10e-08;10 | |ontology_enrichment_celltype_v019=CL:0000945;8.74e-65;24!CL:0000236;3.30e-51;13!CL:0000542;2.13e-23;53!CL:0000784;2.46e-08;3!CL:0000451;3.10e-08;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.02e-64,24;CL:0000826,1.02e-64,24;CL:0000236,3.87e-56,14;CL:0000542,2.54e-38,53;CL:0000051,2.54e-38,53;CL:0000838,5.18e-35,52;CL:0000738,1.34e-18,136;CL:0002087,6.26e-17,115;CL:0002031,2.73e-14,120;CL:0000037,4.14e-14,168;CL:0002032,1.70e-13,161;CL:0000837,1.70e-13,161;CL:0000988,3.87e-13,177;CL:0000784,2.24e-08,3;CL:0000451,2.87e-08,10 | |||
|ontology_enrichment_development_v019=CL:0000051;2.13e-23;53!UBERON:0004872;1.70e-07;7!UBERON:0001045;5.21e-07;1 | |ontology_enrichment_development_v019=CL:0000051;2.13e-23;53!UBERON:0004872;1.70e-07;7!UBERON:0001045;5.21e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:630;2.09e-07;1!DOID:0050177;2.09e-07;1!DOID:0050427;2.09e-07;1!DOID:12603;2.73e-07;1 | |ontology_enrichment_disease_v019=DOID:630;2.09e-07;1!DOID:0050177;2.09e-07;1!DOID:0050427;2.09e-07;1!DOID:12603;2.73e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:630,2.09e-07,1;DOID:0050177,2.09e-07,1;DOID:0050427,2.09e-07,1;DOID:12603,2.66e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.95e-27!115;UBERON:0003296!2.07e-08!4;UBERON:0010133!2.07e-08!4;UBERON:0001894!6.16e-07!7;UBERON:0006222!6.16e-07!7;UBERON:0004177!6.32e-07!7;UBERON:0002106!7.32e-07!3;UBERON:0004854!7.32e-07!3;UBERON:0009034!7.32e-07!3;UBERON:0002095!7.32e-07!3;UBERON:0004782!7.32e-07!3;UBERON:0003281!7.32e-07!3;UBERON:0009664!7.32e-07!3;UBERON:0002296!7.32e-07!3;UBERON:0005602!7.32e-07!3;UBERON:0001179!7.32e-07!3;UBERON:0006293!7.32e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!1.95e-27!115;UBERON:0003296!2.07e-08!4;UBERON:0010133!2.07e-08!4;UBERON:0001894!6.16e-07!7;UBERON:0006222!6.16e-07!7;UBERON:0004177!6.32e-07!7;UBERON:0002106!7.32e-07!3;UBERON:0004854!7.32e-07!3;UBERON:0009034!7.32e-07!3;UBERON:0002095!7.32e-07!3;UBERON:0004782!7.32e-07!3;UBERON:0003281!7.32e-07!3;UBERON:0009664!7.32e-07!3;UBERON:0002296!7.32e-07!3;UBERON:0005602!7.32e-07!3;UBERON:0001179!7.32e-07!3;UBERON:0006293!7.32e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;8.56e-12;2!UBERON:0002106;3.76e-08;3!UBERON:0000029;3.17e-07;1!UBERON:0002372;3.89e-07;1!UBERON:0001961;3.89e-07;1!UBERON:0001744;3.89e-07;1!UBERON:0001042;3.89e-07;1!UBERON:0001735;3.89e-07;1!UBERON:0001154;5.21e-07;1!UBERON:0001153;5.21e-07;1!UBERON:0009854;5.21e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000007;8.56e-12;2!UBERON:0002106;3.76e-08;3!UBERON:0000029;3.17e-07;1!UBERON:0002372;3.89e-07;1!UBERON:0001961;3.89e-07;1!UBERON:0001744;3.89e-07;1!UBERON:0001042;3.89e-07;1!UBERON:0001735;3.89e-07;1!UBERON:0001154;5.21e-07;1!UBERON:0001153;5.21e-07;1!UBERON:0009854;5.21e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,4.91e-12,2;UBERON:0002106,3.76e-08,3;UBERON:0004854,3.76e-08,3;UBERON:0009034,3.76e-08,3;UBERON:0002095,3.76e-08,3;UBERON:0004782,3.76e-08,3;UBERON:0003281,3.76e-08,3;UBERON:0009664,3.76e-08,3;UBERON:0002296,3.76e-08,3;UBERON:0005602,3.76e-08,3;UBERON:0001179,3.76e-08,3;UBERON:0006293,3.76e-08,3;UBERON:0000029,3.36e-07,1;UBERON:0002372,4.25e-07,1;UBERON:0001961,4.25e-07,1;UBERON:0001744,4.25e-07,1;UBERON:0001735,4.25e-07,1;UBERON:0001154,5.37e-07,1;UBERON:0001153,5.37e-07,1;UBERON:0001045,5.37e-07,1 | |||
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|short_description=p5@VOPP1 | |short_description=p5@VOPP1 | ||
}} | }} |
Latest revision as of 01:31, 19 September 2015
Short description: | p5@VOPP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VOPP1_5end |
Coexpression cluster: | C359_xeroderma_tonsil_acute_colon_lymph_trachea_bladder |
Association with transcript: | 18bp_to_ENST00000453256_5end |
EntrezGene: | VOPP1 |
HGNC: | 34518 |
UniProt: | C9JIM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.02e-64 | 24 |
pro-B cell | 1.02e-64 | 24 |
B cell | 3.87e-56 | 14 |
lymphocyte | 2.54e-38 | 53 |
common lymphoid progenitor | 2.54e-38 | 53 |
lymphoid lineage restricted progenitor cell | 5.18e-35 | 52 |
leukocyte | 1.34e-18 | 136 |
nongranular leukocyte | 6.26e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 2.73e-14 | 120 |
hematopoietic stem cell | 4.14e-14 | 168 |
hematopoietic oligopotent progenitor cell | 1.70e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.70e-13 | 161 |
hematopoietic cell | 3.87e-13 | 177 |
plasmacytoid dendritic cell | 2.24e-08 | 3 |
dendritic cell | 2.87e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 4.91e-12 | 2 |
spleen | 3.76e-08 | 3 |
gastrointestinal system mesentery | 3.76e-08 | 3 |
stomach region | 3.76e-08 | 3 |
mesentery | 3.76e-08 | 3 |
gastrointestinal system serosa | 3.76e-08 | 3 |
mesentery of stomach | 3.76e-08 | 3 |
gut mesentery | 3.76e-08 | 3 |
dorsal mesentery | 3.76e-08 | 3 |
dorsal mesogastrium | 3.76e-08 | 3 |
peritoneal cavity | 3.76e-08 | 3 |
spleen primordium | 3.76e-08 | 3 |
lymph node | 3.36e-07 | 1 |
tonsil | 4.25e-07 | 1 |
mucosa-associated lymphoid tissue | 4.25e-07 | 1 |
lymphoid tissue | 4.25e-07 | 1 |
tonsillar ring | 4.25e-07 | 1 |
vermiform appendix | 5.37e-07 | 1 |
caecum | 5.37e-07 | 1 |
midgut | 5.37e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.09e-07 | 1 |
monogenic disease | 2.09e-07 | 1 |
xeroderma pigmentosum | 2.09e-07 | 1 |
acute leukemia | 2.66e-07 | 1 |