FFCP PHASE1:Hg19::chr10:74714487..74714498,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84647 | |EntrezGene=84647 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18555 | |HGNC=18555 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BX93 | |UniProt=Q9BX93 | ||
|association_with_transcript=11bp_to_NM_032562,uc001jtf.1,uc009xqt.1,uc010qjz.1_5end | |association_with_transcript=11bp_to_NM_032562,uc001jtf.1,uc009xqt.1,uc010qjz.1_5end | ||
|cluster_id=chr10:74714487..74714498,- | |||
|coexpression_cluster_id=C89 | |coexpression_cluster_id=C89 | ||
|description=CAGE_peak_4_at_PLA2G12B_5end | |description=CAGE_peak_4_at_PLA2G12B_5end | ||
|id=chr10:74714487..74714498,- | |id=chr10:74714487..74714498,- | ||
|ontology_enrichment_celltype=CL:0000181!6.14e-17!12;CL:0000417!6.14e-17!12;CL:0000668!6.14e-17!12;CL:0000414!6.14e-17!12;CL:0000412!6.14e-17!12;CL:0000182!6.14e-17!12;CL:0002563!4.69e-09!4;CL:0000223!8.34e-08!59;CL:0002322!3.56e-07!5 | |ontology_enrichment_celltype=CL:0000181!6.14e-17!12;CL:0000417!6.14e-17!12;CL:0000668!6.14e-17!12;CL:0000414!6.14e-17!12;CL:0000412!6.14e-17!12;CL:0000182!6.14e-17!12;CL:0002563!4.69e-09!4;CL:0000223!8.34e-08!59;CL:0002322!3.56e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002231;1.40e-14;3!CL:0000182;3.59e-14;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002231,1.40e-14,3;CL:0000182,3.84e-14,12;CL:0000223,6.40e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.33e-15;11!UBERON:0009497;3.64e-13;13!UBERON:0001041;1.07e-12;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002107!2.17e-26!19;UBERON:0006925!2.17e-26!19;UBERON:0008836!2.17e-26!19;UBERON:0008835!1.18e-22!22;UBERON:0003894!1.18e-22!22;UBERON:0009854!1.26e-21!23;UBERON:0007499!8.19e-20!25;UBERON:0009497!8.19e-20!25;UBERON:0000015!8.19e-20!25;UBERON:0002423!8.19e-20!25;UBERON:0006235!8.19e-20!25;UBERON:0004161!8.19e-20!25;UBERON:0005057!5.19e-19!26;UBERON:0009856!5.19e-19!26;UBERON:0003929!2.04e-16!54;UBERON:0002365!8.91e-16!31;UBERON:0002330!8.91e-16!31;UBERON:0002368!7.48e-14!35;UBERON:0005172!4.90e-13!55;UBERON:0005173!4.90e-13!55;UBERON:0005911!2.91e-12!82;UBERON:0002417!1.34e-11!61;UBERON:0000916!1.34e-11!61;UBERON:0004921!2.21e-11!129;UBERON:0004185!2.21e-11!129;UBERON:0000949!1.55e-10!45;UBERON:0002530!6.96e-10!59;UBERON:0001242!4.69e-09!4;UBERON:0001262!4.69e-09!4;UBERON:0004786!4.69e-09!4;UBERON:0004808!4.69e-09!4;UBERON:0001277!4.69e-09!4;UBERON:0001007!4.98e-09!155;UBERON:0001555!4.98e-09!155;UBERON:0007026!4.98e-09!155;UBERON:0004119!4.63e-08!169;UBERON:0000925!4.63e-08!169;UBERON:0006595!4.63e-08!169;UBERON:0003350!2.07e-07!5;UBERON:0005177!2.72e-07!107;UBERON:0000077!5.74e-07!130;UBERON:0009569!8.27e-07!113;UBERON:0001041!9.75e-07!98 | |ontology_enrichment_uberon=UBERON:0002107!2.17e-26!19;UBERON:0006925!2.17e-26!19;UBERON:0008836!2.17e-26!19;UBERON:0008835!1.18e-22!22;UBERON:0003894!1.18e-22!22;UBERON:0009854!1.26e-21!23;UBERON:0007499!8.19e-20!25;UBERON:0009497!8.19e-20!25;UBERON:0000015!8.19e-20!25;UBERON:0002423!8.19e-20!25;UBERON:0006235!8.19e-20!25;UBERON:0004161!8.19e-20!25;UBERON:0005057!5.19e-19!26;UBERON:0009856!5.19e-19!26;UBERON:0003929!2.04e-16!54;UBERON:0002365!8.91e-16!31;UBERON:0002330!8.91e-16!31;UBERON:0002368!7.48e-14!35;UBERON:0005172!4.90e-13!55;UBERON:0005173!4.90e-13!55;UBERON:0005911!2.91e-12!82;UBERON:0002417!1.34e-11!61;UBERON:0000916!1.34e-11!61;UBERON:0004921!2.21e-11!129;UBERON:0004185!2.21e-11!129;UBERON:0000949!1.55e-10!45;UBERON:0002530!6.96e-10!59;UBERON:0001242!4.69e-09!4;UBERON:0001262!4.69e-09!4;UBERON:0004786!4.69e-09!4;UBERON:0004808!4.69e-09!4;UBERON:0001277!4.69e-09!4;UBERON:0001007!4.98e-09!155;UBERON:0001555!4.98e-09!155;UBERON:0007026!4.98e-09!155;UBERON:0004119!4.63e-08!169;UBERON:0000925!4.63e-08!169;UBERON:0006595!4.63e-08!169;UBERON:0003350!2.07e-07!5;UBERON:0005177!2.72e-07!107;UBERON:0000077!5.74e-07!130;UBERON:0009569!8.27e-07!113;UBERON:0001041!9.75e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.91e-19;19!UBERON:0006925;1.91e-19;19!UBERON:0002423;5.33e-15;25!UBERON:0002368;5.25e-12;33!UBERON:0002365;5.25e-12;31!UBERON:0002330;5.25e-12;31!UBERON:0002530;1.04e-08;57!UBERON:0000949;3.74e-07;43!UBERON:0002417;5.02e-07;58!UBERON:0000916;5.02e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.91e-19,19;UBERON:0006925,1.91e-19,19;UBERON:0008836,1.91e-19,19;UBERON:0008835,6.38e-17,22;UBERON:0003894,6.38e-17,22;UBERON:0009854,3.17e-16,23;UBERON:0007499,5.33e-15,25;UBERON:0009497,5.33e-15,25;UBERON:0000015,5.33e-15,25;UBERON:0002423,5.33e-15,25;UBERON:0006235,5.33e-15,25;UBERON:0004161,5.33e-15,25;UBERON:0009856,1.86e-14,26;UBERON:0005911,1.04e-12,82;UBERON:0003929,2.17e-12,54;UBERON:0002365,2.90e-12,31;UBERON:0002330,2.90e-12,31;UBERON:0002530,2.13e-11,59;UBERON:0002368,5.87e-11,35;UBERON:0004921,6.01e-09,118;UBERON:0000949,1.07e-08,45;UBERON:0001041,6.09e-08,87;UBERON:0001007,2.16e-07,145;UBERON:0001555,2.16e-07,145;UBERON:0007026,2.16e-07,145;UBERON:0005172,2.27e-07,54;UBERON:0005173,2.27e-07,54;UBERON:0005177,6.41e-07,101;UBERON:0004119,9.48e-07,160;UBERON:0000925,9.48e-07,160;UBERON:0006595,9.48e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857974989309823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0.551482276150566,0.988990300573997,0.539228350833479,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3916723443601,0,0.771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857974989309823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0.551482276150566,0.988990300573997,0.539228350833479,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3916723443601,0,0.771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@PLA2G12B | |short_description=p4@PLA2G12B | ||
}} | }} |
Latest revision as of 06:18, 19 September 2015
Short description: | p4@PLA2G12B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PLA2G12B_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 11bp_to_NM_032562, uc001jtf.1, uc009xqt.1, uc010qjz.1_5end |
EntrezGene: | PLA2G12B |
HGNC: | 18555 |
UniProt: | Q9BX93 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 1.40e-14 | 3 |
hepatocyte | 3.84e-14 | 12 |
endodermal cell | 6.40e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.91e-19 | 19 |
digestive gland | 1.91e-19 | 19 |
liver bud | 1.91e-19 | 19 |
hepatic diverticulum | 6.38e-17 | 22 |
liver primordium | 6.38e-17 | 22 |
digestive tract diverticulum | 3.17e-16 | 23 |
epithelial sac | 5.33e-15 | 25 |
epithelium of foregut-midgut junction | 5.33e-15 | 25 |
anatomical boundary | 5.33e-15 | 25 |
hepatobiliary system | 5.33e-15 | 25 |
foregut-midgut junction | 5.33e-15 | 25 |
septum transversum | 5.33e-15 | 25 |
sac | 1.86e-14 | 26 |
endo-epithelium | 1.04e-12 | 82 |
gut epithelium | 2.17e-12 | 54 |
exocrine gland | 2.90e-12 | 31 |
exocrine system | 2.90e-12 | 31 |
gland | 2.13e-11 | 59 |
endocrine gland | 5.87e-11 | 35 |
subdivision of digestive tract | 6.01e-09 | 118 |
endocrine system | 1.07e-08 | 45 |
foregut | 6.09e-08 | 87 |
digestive system | 2.16e-07 | 145 |
digestive tract | 2.16e-07 | 145 |
primitive gut | 2.16e-07 | 145 |
abdomen element | 2.27e-07 | 54 |
abdominal segment element | 2.27e-07 | 54 |
trunk region element | 6.41e-07 | 101 |
endoderm-derived structure | 9.48e-07 | 160 |
endoderm | 9.48e-07 | 160 |
presumptive endoderm | 9.48e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |