FFCP PHASE1:Hg19::chr14:23016437..23016488,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12029 | |HGNC=12029 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000478163_5end | |association_with_transcript=0bp_to_ENST00000478163_5end | ||
|cluster_id=chr14:23016437..23016488,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_TRAC_5end | |description=CAGE_peak_1_at_TRAC_5end | ||
|id=chr14:23016437..23016488,+ | |id=chr14:23016437..23016488,+ | ||
|ontology_enrichment_celltype=CL:0000084!5.81e-22!25;CL:0000827!5.81e-22!25;CL:0000791!3.30e-20!18;CL:0000789!3.30e-20!18;CL:0002420!3.30e-20!18;CL:0002419!3.30e-20!18;CL:0000790!3.30e-20!18;CL:0000542!4.27e-17!53;CL:0000051!4.27e-17!53;CL:0000838!1.41e-16!52;CL:0000625!2.59e-13!11;CL:0000738!2.52e-11!140;CL:0002139!3.81e-11!24;CL:0000115!9.89e-10!35;CL:0002031!6.52e-09!124;CL:0002087!7.00e-09!119;CL:0000071!2.07e-08!18;CL:0002546!2.07e-08!18;CL:0000624!5.30e-08!6;CL:0002078!6.13e-08!44;CL:0000988!7.55e-07!182;CL:0000037!8.03e-07!172;CL:0000566!8.03e-07!172 | |ontology_enrichment_celltype=CL:0000084!5.81e-22!25;CL:0000827!5.81e-22!25;CL:0000791!3.30e-20!18;CL:0000789!3.30e-20!18;CL:0002420!3.30e-20!18;CL:0002419!3.30e-20!18;CL:0000790!3.30e-20!18;CL:0000542!4.27e-17!53;CL:0000051!4.27e-17!53;CL:0000838!1.41e-16!52;CL:0000625!2.59e-13!11;CL:0000738!2.52e-11!140;CL:0002139!3.81e-11!24;CL:0000115!9.89e-10!35;CL:0002031!6.52e-09!124;CL:0002087!7.00e-09!119;CL:0000071!2.07e-08!18;CL:0002546!2.07e-08!18;CL:0000624!5.30e-08!6;CL:0002078!6.13e-08!44;CL:0000988!7.55e-07!182;CL:0000037!8.03e-07!172;CL:0000566!8.03e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000791;9.54e-38;18!CL:0000789;9.54e-38;18!CL:0002419;9.54e-38;18!CL:0000084;1.28e-37;25!CL:0000625;1.08e-29;11!CL:0000624;2.26e-12;6!CL:0000542;3.13e-12;53!CL:0000097;4.19e-10;5!CL:0000898;9.87e-10;3!CL:1000413;2.14e-07;9!CL:0000815;4.44e-07;2!CL:0000792;4.44e-07;2!CL:0002677;4.44e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.54e-37,18;CL:0000789,1.54e-37,18;CL:0002420,1.54e-37,18;CL:0002419,1.54e-37,18;CL:0000790,1.54e-37,18;CL:0000084,1.82e-37,25;CL:0000827,1.82e-37,25;CL:0000625,1.69e-29,11;CL:0000838,2.82e-21,52;CL:0000542,9.16e-21,53;CL:0000051,9.16e-21,53;CL:0000624,2.45e-12,6;CL:0000097,3.06e-10,5;CL:0002028,3.06e-10,5;CL:0000898,8.93e-10,3;CL:0002031,1.31e-09,120;CL:0000738,1.87e-09,136;CL:1000413,1.83e-07,9;CL:0002087,2.45e-07,115;CL:0000815,4.19e-07,2;CL:0000792,4.19e-07,2;CL:0002677,4.19e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;9.54e-38;18!CL:0000051;3.13e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.24e-09!15;UBERON:0000179!6.24e-09!15;UBERON:0000463!6.24e-09!15;UBERON:0001009!1.12e-08!113;UBERON:0001986!2.07e-08!18;UBERON:0004638!2.07e-08!18;UBERON:0004852!2.07e-08!18;UBERON:0004177!1.16e-07!7;UBERON:0004535!2.34e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0003915;2.14e-07;9!UBERON:0004700;2.14e-07;9!UBERON:0001917;2.14e-07;9!UBERON:0002370;6.65e-07;2!UBERON:0005058;6.65e-07;2!UBERON:0009113;6.65e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003915,1.83e-07,9;UBERON:0004700,1.83e-07,9;UBERON:0001917,1.83e-07,9;UBERON:0002370,2.63e-07,4;UBERON:0005058,2.63e-07,4;UBERON:0009113,2.63e-07,4;UBERON:0003295,2.63e-07,4;UBERON:0005562,2.63e-07,4;UBERON:0004177,9.20e-07,7;UBERON:0005057,9.20e-07,7 | |||
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| ||
|short_description=p1@TRAC | |short_description=p1@TRAC | ||
}} | }} |
Latest revision as of 06:45, 19 September 2015
Short description: | p1@TRAC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAC_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000478163_5end |
EntrezGene: | NA |
HGNC: | 12029 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.54e-37 | 18 |
alpha-beta T cell | 1.54e-37 | 18 |
immature T cell | 1.54e-37 | 18 |
mature T cell | 1.54e-37 | 18 |
immature alpha-beta T cell | 1.54e-37 | 18 |
T cell | 1.82e-37 | 25 |
pro-T cell | 1.82e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.69e-29 | 11 |
lymphoid lineage restricted progenitor cell | 2.82e-21 | 52 |
lymphocyte | 9.16e-21 | 53 |
common lymphoid progenitor | 9.16e-21 | 53 |
CD4-positive, alpha-beta T cell | 2.45e-12 | 6 |
mast cell | 3.06e-10 | 5 |
basophil mast progenitor cell | 3.06e-10 | 5 |
naive T cell | 8.93e-10 | 3 |
hematopoietic lineage restricted progenitor cell | 1.31e-09 | 120 |
leukocyte | 1.87e-09 | 136 |
endothelial cell of artery | 1.83e-07 | 9 |
nongranular leukocyte | 2.45e-07 | 115 |
regulatory T cell | 4.19e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.19e-07 | 2 |
naive regulatory T cell | 4.19e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
endothelial tube | 1.83e-07 | 9 |
arterial system endothelium | 1.83e-07 | 9 |
endothelium of artery | 1.83e-07 | 9 |
thymus | 2.63e-07 | 4 |
hemolymphoid system gland | 2.63e-07 | 4 |
thymic region | 2.63e-07 | 4 |
pharyngeal gland | 2.63e-07 | 4 |
thymus primordium | 2.63e-07 | 4 |
hemopoietic organ | 9.20e-07 | 7 |
immune organ | 9.20e-07 | 7 |