FFCP PHASE1:Hg19::chr4:90758565..90758580,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6622 | |EntrezGene=6622 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11138 | |HGNC=11138 | ||
|TSSclassifier=strong | |||
|UniProt=P37840 | |UniProt=P37840 | ||
|association_with_transcript=-186bp_to_ENST00000394991_5end | |association_with_transcript=-186bp_to_ENST00000394991_5end | ||
|cluster_id=chr4:90758565..90758580,- | |||
|description=CAGE_peak_9_at_SNCA_5end | |description=CAGE_peak_9_at_SNCA_5end | ||
|id=chr4:90758565..90758580,- | |id=chr4:90758565..90758580,- | ||
|ontology_enrichment_celltype=CL:0002139!8.67e-14!24;CL:0000115!2.08e-11!35;CL:0005020!8.28e-09!6;CL:0002138!8.28e-09!6;CL:0005022!8.28e-09!6;CL:0002078!9.93e-09!44;CL:0000071!1.02e-07!18;CL:0002546!1.02e-07!18 | |ontology_enrichment_celltype=CL:0002139!8.67e-14!24;CL:0000115!2.08e-11!35;CL:0005020!8.28e-09!6;CL:0002138!8.28e-09!6;CL:0005022!8.28e-09!6;CL:0002078!9.93e-09!44;CL:0000071!1.02e-07!18;CL:0002546!1.02e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.74e-12;24!CL:0000115;1.14e-10;36!CL:0002138;3.42e-10;6!CL:0002618;3.68e-09;3 | |ontology_enrichment_celltype_v019=CL:0002139;4.74e-12;24!CL:0000115;1.14e-10;36!CL:0002138;3.42e-10;6!CL:0002618;3.68e-09;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.56e-12,36;CL:0002139,5.66e-12,24;CL:0005020,5.06e-10,6;CL:0002138,5.06e-10,6;CL:0005022,5.06e-10,6;CL:0002078,9.68e-10,45;CL:0002618,3.12e-09,3;CL:0000213,3.05e-07,58;CL:0000215,3.05e-07,58 | |||
|ontology_enrichment_development_v019=CL:0005022;3.42e-10;6 | |ontology_enrichment_development_v019=CL:0005022;3.42e-10;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.09e-28!115;UBERON:0001049!1.20e-20!57;UBERON:0005068!1.20e-20!57;UBERON:0006241!1.20e-20!57;UBERON:0007135!1.20e-20!57;UBERON:0002020!4.08e-19!34;UBERON:0003528!4.08e-19!34;UBERON:0001893!7.60e-19!34;UBERON:0002780!1.36e-18!41;UBERON:0001890!1.36e-18!41;UBERON:0006240!1.36e-18!41;UBERON:0002616!2.67e-18!59;UBERON:0003080!6.05e-18!42;UBERON:0002791!8.21e-18!33;UBERON:0001869!2.98e-17!32;UBERON:0005743!9.93e-17!86;UBERON:0000073!1.69e-16!94;UBERON:0001016!1.69e-16!94;UBERON:0000955!5.62e-16!69;UBERON:0006238!5.62e-16!69;UBERON:0001017!2.71e-15!82;UBERON:0003075!4.88e-15!86;UBERON:0007284!4.88e-15!86;UBERON:0002346!7.89e-14!90;UBERON:0002619!1.92e-12!22;UBERON:0003056!2.02e-12!61;UBERON:0002308!1.27e-11!9;UBERON:0000125!1.27e-11!9;UBERON:0000956!1.93e-10!25;UBERON:0000203!1.93e-10!25;UBERON:0001950!1.94e-10!20;UBERON:0009663!1.49e-09!7;UBERON:0002420!2.62e-09!9;UBERON:0007245!2.62e-09!9;UBERON:0010009!2.62e-09!9;UBERON:0010011!2.62e-09!9;UBERON:0000454!2.62e-09!9;UBERON:0000200!4.57e-09!6;UBERON:0000033!9.59e-09!123;UBERON:0000153!7.91e-08!129;UBERON:0007811!7.91e-08!129;UBERON:0002193!7.96e-08!112;UBERON:0001986!1.02e-07!18;UBERON:0004638!1.02e-07!18;UBERON:0004852!1.02e-07!18;UBERON:0004111!2.79e-07!241;UBERON:0000025!6.30e-07!194 | |ontology_enrichment_uberon=UBERON:0007023!3.09e-28!115;UBERON:0001049!1.20e-20!57;UBERON:0005068!1.20e-20!57;UBERON:0006241!1.20e-20!57;UBERON:0007135!1.20e-20!57;UBERON:0002020!4.08e-19!34;UBERON:0003528!4.08e-19!34;UBERON:0001893!7.60e-19!34;UBERON:0002780!1.36e-18!41;UBERON:0001890!1.36e-18!41;UBERON:0006240!1.36e-18!41;UBERON:0002616!2.67e-18!59;UBERON:0003080!6.05e-18!42;UBERON:0002791!8.21e-18!33;UBERON:0001869!2.98e-17!32;UBERON:0005743!9.93e-17!86;UBERON:0000073!1.69e-16!94;UBERON:0001016!1.69e-16!94;UBERON:0000955!5.62e-16!69;UBERON:0006238!5.62e-16!69;UBERON:0001017!2.71e-15!82;UBERON:0003075!4.88e-15!86;UBERON:0007284!4.88e-15!86;UBERON:0002346!7.89e-14!90;UBERON:0002619!1.92e-12!22;UBERON:0003056!2.02e-12!61;UBERON:0002308!1.27e-11!9;UBERON:0000125!1.27e-11!9;UBERON:0000956!1.93e-10!25;UBERON:0000203!1.93e-10!25;UBERON:0001950!1.94e-10!20;UBERON:0009663!1.49e-09!7;UBERON:0002420!2.62e-09!9;UBERON:0007245!2.62e-09!9;UBERON:0010009!2.62e-09!9;UBERON:0010011!2.62e-09!9;UBERON:0000454!2.62e-09!9;UBERON:0000200!4.57e-09!6;UBERON:0000033!9.59e-09!123;UBERON:0000153!7.91e-08!129;UBERON:0007811!7.91e-08!129;UBERON:0002193!7.96e-08!112;UBERON:0001986!1.02e-07!18;UBERON:0004638!1.02e-07!18;UBERON:0004852!1.02e-07!18;UBERON:0004111!2.79e-07!241;UBERON:0000025!6.30e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.76e-20;15!UBERON:0000179;1.76e-20;15!UBERON:0000463;1.76e-20;15!UBERON:0002193;8.95e-11;42!UBERON:0002390;8.57e-09;32!UBERON:0001473;9.34e-08;8!UBERON:0004536;9.34e-08;8!UBERON:0006558;9.34e-08;8!UBERON:0002022;1.74e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.76e-20;15!UBERON:0000179;1.76e-20;15!UBERON:0000463;1.76e-20;15!UBERON:0002193;8.95e-11;42!UBERON:0002390;8.57e-09;32!UBERON:0001473;9.34e-08;8!UBERON:0004536;9.34e-08;8!UBERON:0006558;9.34e-08;8!UBERON:0002022;1.74e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.08e-20,15;UBERON:0000179,2.08e-20,15;UBERON:0000463,2.08e-20,15;UBERON:0004535,1.21e-08,109;UBERON:0001009,2.43e-08,112;UBERON:0001473,1.25e-07,8;UBERON:0004536,1.25e-07,8;UBERON:0006558,1.25e-07,8;UBERON:0002022,1.30e-07,1;UBERON:0002193,2.28e-07,108;UBERON:0007023,7.32e-07,114 | |||
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|short_description=p9@SNCA | |short_description=p9@SNCA | ||
}} | }} |
Latest revision as of 08:52, 19 September 2015
Short description: | p9@SNCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SNCA_5end |
Coexpression cluster: | NA |
Association with transcript: | -186bp_to_ENST00000394991_5end |
EntrezGene: | SNCA |
HGNC: | 11138 |
UniProt: | P37840 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.56e-12 | 36 |
endothelial cell of vascular tree | 5.66e-12 | 24 |
lymphangioblast | 5.06e-10 | 6 |
endothelial cell of lymphatic vessel | 5.06e-10 | 6 |
vascular lymphangioblast | 5.06e-10 | 6 |
meso-epithelial cell | 9.68e-10 | 45 |
endothelial cell of umbilical vein | 3.12e-09 | 3 |
lining cell | 3.05e-07 | 58 |
barrier cell | 3.05e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
blood | 2.08e-20 | 15 |
haemolymphatic fluid | 2.08e-20 | 15 |
organism substance | 2.08e-20 | 15 |
cardiovascular system | 1.21e-08 | 109 |
circulatory system | 2.43e-08 | 112 |
lymphatic vessel | 1.25e-07 | 8 |
lymph vasculature | 1.25e-07 | 8 |
lymphatic part of lymphoid system | 1.25e-07 | 8 |
insula | 1.30e-07 | 1 |
hemolymphoid system | 2.28e-07 | 108 |
adult organism | 7.32e-07 | 114 |