FFCP PHASE1:Hg19::chr5:95998714..95998744,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=831 | |EntrezGene=831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=1515 | |HGNC=1515 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=E7EN75,D6RGF7 | |UniProt=E7EN75,D6RGF7 | ||
|association_with_transcript=0bp_to_ENST00000506811,ENST00000510245,ENST00000514055_5end | |association_with_transcript=0bp_to_ENST00000506811,ENST00000510245,ENST00000514055_5end | ||
|cluster_id=chr5:95998714..95998744,+ | |||
|coexpression_cluster_id=C4533 | |coexpression_cluster_id=C4533 | ||
|description=CAGE_peak_5_at_CAST_5end | |description=CAGE_peak_5_at_CAST_5end | ||
Latest revision as of 09:00, 19 September 2015
| Short description: | p5@CAST |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_CAST_5end |
| Coexpression cluster: | C4533_lung_gall_rectal_salivary_Prostate_Keratinocyte_amniotic |
| Association with transcript: | 0bp_to_ENST00000506811, ENST00000510245, ENST00000514055_5end |
| EntrezGene: | CAST |
| HGNC: | 1515 |
| UniProt: | E7EN75D6RGF7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@CAST |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 8.15e-15 | 42 |
| endodermal cell | 5.80e-13 | 58 |
| epithelial cell | 1.97e-12 | 253 |
| vascular associated smooth muscle cell | 4.14e-08 | 32 |
| smooth muscle cell | 3.81e-07 | 43 |
| smooth muscle myoblast | 3.81e-07 | 43 |
| muscle precursor cell | 7.04e-07 | 58 |
| myoblast | 7.04e-07 | 58 |
| multi-potent skeletal muscle stem cell | 7.04e-07 | 58 |
| embryonic cell | 7.74e-07 | 250 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 2.40e-17 | 160 |
| endoderm | 2.40e-17 | 160 |
| presumptive endoderm | 2.40e-17 | 160 |
| digestive system | 1.27e-14 | 145 |
| digestive tract | 1.27e-14 | 145 |
| primitive gut | 1.27e-14 | 145 |
| subdivision of digestive tract | 1.24e-11 | 118 |
| respiratory system | 2.15e-11 | 74 |
| trunk | 9.61e-11 | 199 |
| surface structure | 1.46e-10 | 99 |
Showing 1 to 10 of 35 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 1.33e-08 | 106 |
| female reproductive organ cancer | 6.45e-07 | 27 |
Showing 1 to 2 of 2 entries
