FFCP PHASE1:Hg19::chr7:76139741..76139750,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80761 | |EntrezGene=80761 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21444 | |HGNC=21444 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHH5,Q9BT76 | |UniProt=A6NHH5,Q9BT76 | ||
|association_with_transcript=0bp_to_ENST00000334348,ENST00000419923,ENST00000443097,ENST00000448265,NM_030570,NM_182684,uc003ufo.2,uc003ufq.2,uc010ldk.1_5end | |association_with_transcript=0bp_to_ENST00000334348,ENST00000419923,ENST00000443097,ENST00000448265,NM_030570,NM_182684,uc003ufo.2,uc003ufq.2,uc010ldk.1_5end | ||
|cluster_id=chr7:76139741..76139750,+ | |||
|coexpression_cluster_id=C1193 | |coexpression_cluster_id=C1193 | ||
|description=CAGE_peak_6_at_UPK3B_5end | |description=CAGE_peak_6_at_UPK3B_5end | ||
|id=chr7:76139741..76139750,+ | |id=chr7:76139741..76139750,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.49e-12!254;CL:0000077!3.94e-11!19;CL:0002586!8.58e-10!3;CL:0002150!9.44e-08!3;CL:0000861!9.44e-08!3;CL:0000149!2.05e-07!4;CL:0000159!9.90e-07!2 | |ontology_enrichment_celltype=CL:0000066!2.49e-12!254;CL:0000077!3.94e-11!19;CL:0002586!8.58e-10!3;CL:0002150!9.44e-08!3;CL:0000861!9.44e-08!3;CL:0000149!2.05e-07!4;CL:0000159!9.90e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.09e-29;19!CL:0002586;8.55e-17;3!CL:0000313;1.61e-13;1!CL:0000149;7.70e-13;4!CL:0002537;3.05e-10;5!CL:0000159;2.15e-07;2!CL:0002097;4.69e-07;2!CL:0000575;4.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.04e-29,19;CL:0002586,7.30e-17,3;CL:0000313,1.61e-13,1;CL:0000149,6.84e-13,4;CL:0000076,4.59e-11,63;CL:0002537,3.27e-10,5;CL:0000213,2.39e-09,58;CL:0000215,2.39e-09,58;CL:0000159,2.15e-07,2;CL:0000066,3.14e-07,253;CL:0002097,4.69e-07,2;CL:0000575,5.60e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.92e-13!106;DOID:0050687!1.95e-09!143;DOID:299!3.92e-09!25;DOID:162!2.33e-08!235;DOID:14566!5.44e-08!239;DOID:193!2.22e-07!29 | |ontology_enrichment_disease=DOID:305!4.92e-13!106;DOID:0050687!1.95e-09!143;DOID:299!3.92e-09!25;DOID:162!2.33e-08!235;DOID:14566!5.44e-08!239;DOID:193!2.22e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:2152;1.61e-13;1!DOID:4468;2.50e-07;2!DOID:3493;4.69e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.61e-13,1;DOID:4468,2.43e-07,2;DOID:3493,5.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001781!8.58e-10!3;UBERON:0001782!8.58e-10!3;UBERON:0005424!8.58e-10!3;UBERON:0002110!3.26e-08!3;UBERON:0006242!3.26e-08!3;UBERON:0002323!1.64e-07!46;UBERON:0004458!7.15e-07!49 | |ontology_enrichment_uberon=UBERON:0001781!8.58e-10!3;UBERON:0001782!8.58e-10!3;UBERON:0005424!8.58e-10!3;UBERON:0002110!3.26e-08!3;UBERON:0006242!3.26e-08!3;UBERON:0002323!1.64e-07!46;UBERON:0004458!7.15e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.55e-17;3!UBERON:0001782;8.55e-17;3!UBERON:0004911;1.61e-13;1!UBERON:0002171;7.68e-13;1!UBERON:0006518;7.68e-13;1!UBERON:0008949;7.68e-13;1!UBERON:0000101;7.68e-13;1!UBERON:0002167;7.68e-13;1!UBERON:0000966;1.86e-10;5!UBERON:0005388;1.86e-10;5!UBERON:0001802;1.86e-10;5!UBERON:0000305;1.45e-07;7!UBERON:0004909;2.15e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,7.30e-17,3;UBERON:0005424,7.30e-17,3;UBERON:0004911,1.61e-13,1;UBERON:0002171,6.82e-13,1;UBERON:0006518,6.82e-13,1;UBERON:0008949,6.82e-13,1;UBERON:0000101,6.82e-13,1;UBERON:0002167,6.82e-13,1;UBERON:0001781,6.84e-13,4;UBERON:0000966,6.77e-09,6;UBERON:0005388,6.77e-09,6;UBERON:0001802,6.77e-09,6;UBERON:0000305,1.52e-07,7;UBERON:0004909,2.15e-07,2 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22015127883421,0.871533458600294,7.59794732983634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.35965212697862,4.92021968549559,0.976135183992909,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0.86101074534246,0,1.7737206141467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07875276582847,1.22864280839693,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0.945550727071745,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.87638109372932,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0.694238953340524,0.0979923974143777,0,0,0,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0.195551382734803,0.160317640503067,0.213452994739353,0.39961921916426,0.432271251462318,0,0,0,0,0,0.407712618220842,0.313808538937,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640724475406168,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.300515217994437,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0,0,0,1.50109113962448,1.82696004375648,0,0,0,0,4.32322026025361,2.63140859494449,0,5.2086790333147,0.506827321959218,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0.431855182437243,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,8.38915738483442,0,1.09726132484042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p6@UPK3B | |short_description=p6@UPK3B | ||
}} | }} |
Latest revision as of 14:05, 19 September 2015
Short description: | p6@UPK3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_UPK3B_5end |
Coexpression cluster: | C1193_mesothelioma_Mesothelial_Retinal_clear_amniotic_serous_Urothelial |
Association with transcript: | 0bp_to_ENST00000334348, ENST00000419923, ENST00000443097, ENST00000448265, NM_030570, NM_182684, uc003ufo.2, uc003ufq.2, uc010ldk.1_5end |
EntrezGene: | UPK3B |
HGNC: | 21444 |
UniProt: | A6NHH5Q9BT76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.04e-29 | 19 |
retinal pigment epithelial cell | 7.30e-17 | 3 |
serous secreting cell | 1.61e-13 | 1 |
visual pigment cell | 6.84e-13 | 4 |
squamous epithelial cell | 4.59e-11 | 63 |
amnion mesenchymal stem cell | 3.27e-10 | 5 |
lining cell | 2.39e-09 | 58 |
barrier cell | 2.39e-09 | 58 |
seromucus secreting cell | 2.15e-07 | 2 |
epithelial cell | 3.14e-07 | 253 |
cortical cell of adrenal gland | 4.69e-07 | 2 |
corneal epithelial cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 7.30e-17 | 3 |
presumptive retinal pigmented epithelium | 7.30e-17 | 3 |
epithelium of female gonad | 1.61e-13 | 1 |
lower lobe of right lung | 6.82e-13 | 1 |
right lung lobe | 6.82e-13 | 1 |
lower lobe of lung | 6.82e-13 | 1 |
lobe of lung | 6.82e-13 | 1 |
right lung | 6.82e-13 | 1 |
layer of retina | 6.84e-13 | 4 |
retina | 6.77e-09 | 6 |
photoreceptor array | 6.77e-09 | 6 |
posterior segment of eyeball | 6.77e-09 | 6 |
amnion | 1.52e-07 | 7 |
epithelium of gonad | 2.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.61e-13 | 1 |
clear cell adenocarcinoma | 2.43e-07 | 2 |
signet ring cell adenocarcinoma | 5.28e-07 | 2 |