FFCP PHASE1:Hg19::chr12:58145604..58145631,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:58145604..58145631,- to FFCP PHASE1:Hg19::chr12:58145604..58145631,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1019 | |EntrezGene=1019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1773 | |HGNC=1773 | ||
|TSSclassifier=strong | |||
|UniProt=F8VWX7 | |UniProt=F8VWX7 | ||
|association_with_transcript=28bp_to_ENST00000552254_5end | |||
|cluster_id=chr12:58145604..58145631,- | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_4_at_CDK4_5end | |||
|id=chr12:58145604..58145631,- | |||
|ontology_enrichment_celltype=CL:0000055!1.34e-19!180;CL:0000680!8.74e-14!57;CL:0000056!8.74e-14!57;CL:0000355!8.74e-14!57;CL:0000187!5.74e-13!54;CL:0000192!6.70e-13!42;CL:0000514!6.70e-13!42;CL:0000144!1.93e-12!625;CL:0000183!2.58e-12!59;CL:0000393!2.41e-11!60;CL:0000211!2.41e-11!60;CL:0000548!3.11e-10!679;CL:0000004!3.11e-10!679;CL:0000255!3.11e-10!679;CL:0000012!6.88e-10!682;CL:0000359!1.43e-09!32;CL:0002371!1.47e-09!591;CL:0000222!1.69e-09!119;CL:0000220!1.09e-08!246;CL:0002321!2.07e-08!248;CL:0000048!2.72e-08!430;CL:0000723!5.14e-08!436;CL:0000034!9.94e-08!444;CL:0000057!1.62e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000569;4.01e-21;4!CL:1000306;2.01e-12;4!CL:0002547;2.01e-12;4!CL:0002504;9.04e-08;3!CL:1000279;9.04e-08;3!CL:1000280;9.04e-08;3!CL:0000192;8.17e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,1.34e-20,4;CL:0000011,1.34e-20,4;CL:1000306,1.27e-12,4;CL:0002547,1.27e-12,4;CL:0000192,2.67e-08,43;CL:0000514,2.67e-08,43;CL:0002504,1.37e-07,3;CL:1000279,1.37e-07,3;CL:1000280,1.37e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000011;4.01e-21;4!CL:0000514;8.17e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!1.18e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1909;1.21e-11;2!DOID:3371;6.04e-07;1!DOID:4549;6.04e-07;1!DOID:5861;6.04e-07;1!DOID:6496;6.04e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.15e-11,2;DOID:3371,5.90e-07,1;DOID:4549,5.90e-07,1;DOID:5861,5.90e-07,1;DOID:6496,5.90e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001134!8.45e-13!61;UBERON:0002036!8.45e-13!61;UBERON:0003082!8.45e-13!61;UBERON:0002385!5.99e-12!63;UBERON:0001015!5.99e-12!63;UBERON:0000383!5.99e-12!63;UBERON:0004290!1.88e-11!70;UBERON:0000914!2.75e-10!83;UBERON:0002329!2.75e-10!83;UBERON:0003077!2.75e-10!83;UBERON:0003059!2.75e-10!83;UBERON:0007282!2.75e-10!83;UBERON:0009618!2.75e-10!83;UBERON:0007285!2.75e-10!83;UBERON:0000486!3.79e-10!82;UBERON:0004872!3.93e-09!84;UBERON:0003914!7.51e-08!118;UBERON:0001637!8.73e-08!42;UBERON:0003509!8.73e-08!42;UBERON:0004572!8.73e-08!42;UBERON:0000490!3.83e-07!138;UBERON:0001981!3.91e-07!60;UBERON:0007500!3.91e-07!60;UBERON:0004537!3.91e-07!60;UBERON:0006965!3.91e-07!60;UBERON:0005256!3.94e-07!143;UBERON:0004535!4.04e-07!110;UBERON:0004573!5.85e-07!33;UBERON:0004571!5.85e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;2.01e-12;4!UBERON:0000415;2.01e-12;4!UBERON:0007240;2.01e-12;4!UBERON:0005742;2.01e-12;4!UBERON:0005734;2.01e-12;4!UBERON:0004664;2.01e-12;4!UBERON:0004663;2.01e-12;4!UBERON:0001135;1.34e-08;15!UBERON:0000947;1.48e-08;21!UBERON:0010191;1.48e-08;21!UBERON:0004573;9.38e-08;33!UBERON:0004571;9.38e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.27e-12,4;UBERON:0007240,1.27e-12,4;UBERON:0005742,1.27e-12,4;UBERON:0005734,1.27e-12,4;UBERON:0004664,1.27e-12,4;UBERON:0004663,1.27e-12,4;UBERON:0004872,5.13e-11,83;UBERON:0003914,1.80e-10,117;UBERON:0004573,4.13e-09,33;UBERON:0004571,4.13e-09,33;UBERON:0007500,8.12e-09,59;UBERON:0001981,8.12e-09,59;UBERON:0004537,8.12e-09,59;UBERON:0006965,8.12e-09,59;UBERON:0001637,9.67e-09,42;UBERON:0003509,9.67e-09,42;UBERON:0004572,9.67e-09,42;UBERON:0000947,1.19e-08,21;UBERON:0010191,1.19e-08,21;UBERON:0001135,1.54e-08,15;UBERON:0004535,1.21e-07,109;UBERON:0004797,2.12e-07,7;UBERON:0000055,2.25e-07,68;UBERON:0001009,2.34e-07,112 | |||
|phase1_expression=0.54503513781167,0,0.563817616383885,0,0,0,0,0,0,0.737201809504527,0,0.218441372130172,0,0.123766352960047,0,2.01697543935533,0.602694528023977,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0,0,0,0,0.221729397462564,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,1.52054421143703,0,0,0,0.17859945656816,0,0,3.06633274931766,0,0.366403487860815,0,0,0,0.496971951695318,1.2663051166458,2.38336525463794,1.43418310374407,0.709336764396714,0.560677600142307,0,0.24666754841716,0.622422070799533,0,0.653847612453835,0,0,0.234321431833797,0.312160076830321,0,0,0.117434498643765,0,0.421352420106746,0,0,0.103325781175765,0,0,0,0,0.336672227908132,0,0.277064115484183,0,0,0.150238058906597,0.680593098960126,0.358779271377724,0,0.211931901159562,0.300091096084402,0.103052529238439,0.515281080091258,0,0.168776332241266,0.194874010322397,0.504867548488229,0.0920498986422993,0,0.355009592516614,0.10075209822764,0.169560592310488,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.977424915930974,0,0,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0.234004265139238,0,0,0,0.283550194484773,0,0,0,0,0.176096868026452,0,0,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0.600686115687835,0,0.224262168690721,0,0.22001485746285,0.517086863031111,0,0,0.531876233169741,0,0,0,0.799266537048298,0.142977993658148,0,1.64648067356154,0,0,0,1.20575750823834,0.871533458600294,0.799783929456456,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0,0,0.300946099727719,0,0,0,0.184369168541703,0.347534457872331,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0,0.561320188866147,0.128139149255701,0,0.321707842287215,0,0.462629081407967,0.355123450626254,0.410635780069046,1.03850885836724,0.348631135379878,0.362578348774867,0.200506470303285,0,0.574072240823034,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0.261435451024901,0,0.328014645699706,0,0,0,0.082509499920588,0,0,0,0.580024309752732,0.308097234229289,0,0,0.214840489736547,0,0.170453254832202,0.178064071293475,0,0,0,0,1.39453664789186,0.31481234683064,0,0.616067160352178,2.12922412126809,0,0.55597265731176,0.143124886741991,0.372158369359667,0,0.190630193923825,0.767693373934002,0.42793898803392,1.27281299170375,0,0.179872457583315,1.09814811894422,1.17812402345686,0.808729926293264,0,0.421258456238981,0,0.974853958525138,0,0.272999822815972,0.424216295861138,0,0.551365343546124,1.32687795048244,0.438450885253763,1.15755106853338,0,0.405820753925408,1.54911749049875,0.563391205064483,0.286822704408103,0.392996164052485,0,0.354761064070598,0,0.658589785919804,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0.144269212976445,0,0,0,0,0,0.324621940274555,0.280797178113459,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0.278406173895242,1.23087398947712,0.540911356951966,0,0,0.37428108081644,0.146508179271894,0,0.111443384277478,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0.123084805461069,0,0,0,0,0.295930216910801,0,0,0,0,0,0.260427761085233,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02547850262301,0.23056390438806,0.179515288819544,0,0,0,0,0,0.156980256395025,0.664846727600626,0.225595660617181,0.980312671588698,0.839107934879214,0.75901493089674,0.317873157960757,0,0,0.141353071433941,0,0,0,0,0.296521128680622,0.247127877893006,0.208843899010911,0,0,0,0,0,0.242780379534093,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0.0870592065804026,0,0,0,0.146178634172371,0,0,3.79501344773451,0,0.274083849293502,0,0,0,0,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0.543616824294456,0,0,0.577901179803038,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,0,1.16495949527454,0.315132729228895,0.247247575143499,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,1.08599920350743,0,0.326587360109409,0,0.574647645245373,25.2174272242424,0.113312091520126,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,1.21319294033318,2.56918800190471,0.235265819698172,0.468334905806882,0,0.74627401443437,1.40227985908335,0,0.568209015825267,1.50940741051545,0.889811221596536,2.74608082076308,1.20984739010591,1.08806040407946,1.03498604992744,1.1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| ||
|short_description=p4@CDK4 | |||
}} | }} |
Latest revision as of 16:29, 19 September 2015
Short description: | p4@CDK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDK4_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | 28bp_to_ENST00000552254_5end |
EntrezGene: | CDK4 |
HGNC: | 1773 |
UniProt: | F8VWX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 1.34e-20 | 4 |
migratory trunk neural crest cell | 1.34e-20 | 4 |
fibroblast of tunica adventitia of artery | 1.27e-12 | 4 |
fibroblast of the aortic adventitia | 1.27e-12 | 4 |
smooth muscle cell | 2.67e-08 | 43 |
smooth muscle myoblast | 2.67e-08 | 43 |
enteric smooth muscle cell | 1.37e-07 | 3 |
smooth muscle cell of large intestine | 1.37e-07 | 3 |
smooth muscle cell of colon | 1.37e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
artery wall | 1.27e-12 | 4 |
tunica adventitia of artery | 1.27e-12 | 4 |
adventitia | 1.27e-12 | 4 |
tunica adventitia of blood vessel | 1.27e-12 | 4 |
aorta tunica adventitia | 1.27e-12 | 4 |
aorta wall | 1.27e-12 | 4 |
splanchnic layer of lateral plate mesoderm | 5.13e-11 | 83 |
epithelial tube | 1.80e-10 | 117 |
systemic artery | 4.13e-09 | 33 |
systemic arterial system | 4.13e-09 | 33 |
epithelial tube open at both ends | 8.12e-09 | 59 |
blood vessel | 8.12e-09 | 59 |
blood vasculature | 8.12e-09 | 59 |
vascular cord | 8.12e-09 | 59 |
artery | 9.67e-09 | 42 |
arterial blood vessel | 9.67e-09 | 42 |
arterial system | 9.67e-09 | 42 |
aorta | 1.19e-08 | 21 |
aortic system | 1.19e-08 | 21 |
smooth muscle tissue | 1.54e-08 | 15 |
cardiovascular system | 1.21e-07 | 109 |
blood vessel layer | 2.12e-07 | 7 |
vessel | 2.25e-07 | 68 |
circulatory system | 2.34e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.15e-11 | 2 |
chondrosarcoma | 5.90e-07 | 1 |
extraosseous chondrosarcoma | 5.90e-07 | 1 |
myxoid chondrosarcoma | 5.90e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 5.90e-07 | 1 |