FFCP PHASE1:Hg19::chr6:75828867..75828885,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |EntrezGene=1303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2188 | |HGNC=2188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-93bp_to_ENST00000493109_5end | |association_with_transcript=-93bp_to_ENST00000493109_5end | ||
|cluster_id=chr6:75828867..75828885,- | |||
|coexpression_cluster_id=C393 | |||
|description=CAGE_peak_10_at_COL12A1_5end | |description=CAGE_peak_10_at_COL12A1_5end | ||
|id=chr6:75828867..75828885,- | |id=chr6:75828867..75828885,- | ||
|ontology_enrichment_celltype=CL:0000057!1.03e-10!75;CL:0002620!2.94e-10!23 | |ontology_enrichment_celltype=CL:0000057!1.03e-10!75;CL:0002620!2.94e-10!23 | ||
|ontology_enrichment_celltype_v019=CL:0002563;9.05e-18;4!CL:0002334;6.19e-16;12!CL:0002537;1.20e-14;5!CL:0002580;2.03e-11;3!CL:0002579;3.78e-11;3!CL:0000228;5.51e-09;1!CL:0002581;5.51e-09;1!CL:0002372;5.51e-09;1!CL:0002616;5.51e-09;1!CL:0002620;3.75e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,9.36e-18,4;CL:0002334,4.76e-16,12;CL:0002537,6.59e-15,5;CL:0002580,1.57e-11,3;CL:0002579,3.60e-11,3;CL:0000057,2.99e-10,76;CL:0002616,3.05e-09,1;CL:0002581,4.54e-09,1;CL:0000228,4.91e-09,1;CL:0002372,4.91e-09,1;CL:0002620,5.18e-08,23 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.12e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;2.46e-14;5!DOID:450;2.46e-14;5!DOID:66;2.46e-14;5!DOID:423;2.46e-14;5!DOID:0080000;2.46e-14;5!DOID:11722;2.46e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.37e-14,5;DOID:450,4.37e-14,5;DOID:66,4.37e-14,5;DOID:423,4.37e-14,5;DOID:0080000,4.37e-14,5;DOID:11722,4.37e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!6.13e-10!6;UBERON:0002358!6.13e-10!6;UBERON:0003684!6.13e-10!6;UBERON:0001178!6.13e-10!6;UBERON:0001737!3.21e-09!9;UBERON:0004923!4.51e-07!57 | |ontology_enrichment_uberon=UBERON:0003688!6.13e-10!6;UBERON:0002358!6.13e-10!6;UBERON:0003684!6.13e-10!6;UBERON:0001178!6.13e-10!6;UBERON:0001737!3.21e-09!9;UBERON:0004923!4.51e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0001242;9.05e-18;4!UBERON:0001262;9.05e-18;4!UBERON:0004786;9.05e-18;4!UBERON:0004808;9.05e-18;4!UBERON:0001277;9.05e-18;4!UBERON:0005406;2.98e-16;2!UBERON:0003688;2.80e-12;6!UBERON:0002358;2.80e-12;6!UBERON:0003684;2.80e-12;6!UBERON:0001178;2.80e-12;6!UBERON:0000305;1.30e-10;7!UBERON:0000485;2.15e-10;7!UBERON:0003929;2.15e-10;7!UBERON:0003350;3.70e-09;8!UBERON:0004457;2.37e-08;9!UBERON:0000042;2.37e-08;9!UBERON:0000310;1.18e-07;10!UBERON:0005631;1.43e-07;10!UBERON:0000158;1.43e-07;10!UBERON:0001443;5.35e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,9.36e-18,4;UBERON:0001262,9.36e-18,4;UBERON:0004786,9.36e-18,4;UBERON:0004808,9.36e-18,4;UBERON:0001277,9.36e-18,4;UBERON:0005406,1.37e-16,2;UBERON:0003688,2.70e-12,6;UBERON:0002358,2.70e-12,6;UBERON:0003684,2.70e-12,6;UBERON:0001178,2.70e-12,6;UBERON:0000305,8.47e-11,7;UBERON:0004871,1.65e-09,8;UBERON:0003350,3.76e-09,8;UBERON:0000485,3.46e-08,9;UBERON:0004923,3.50e-08,66;UBERON:0000310,1.07e-07,10;UBERON:0001443,4.89e-07,11 | |||
|phase1_expression=0.363356758541113,2.14100523890983,0.986680828671798,4.00293193412522,0.446961094427288,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,1.73815822752988,0,0.973269740605272,0.189069634328136,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0.612975591598039,0.150238058906597,0,1.07633781413317,1.2813443329114,0.847727604638247,1.20036438433761,0,1.28820270022815,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.644349290496095,0.161646056818812,1.06502877754984,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.337169380156203,0.482022059766964,0.330881918197182,0.435758888184812,0.237270619111097,0.539325232640658,0,0.38474715694639,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0,0.831883446123229,0.535286966391485,0.315404830067869,0.585707074963566,0.300946099727719,0,0,0,0.368738337083406,0,0,0,0,0,0,0.303127571446259,0,0.907170879989041,0.992431231275107,1.53461973288062,2.52594084989766,0.512556597022804,1.02341449813341,1.93024705372329,1.48418066444991,0,0,0,0,0,0.483437798366489,0,0,0.114814448164607,0,0.262248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0,0,0,0.565621727814851,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,35.9327263807493,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.307801034015188,0.227884111694002,0,0,0,0.638002319463839,0.732780747214898,0,0,0.156980256395025,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246346371159628,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0.662091970365432,1.017074150619,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,2.04365596629566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0.438568099157414,0,0,0.337884881306145,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2249819094128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,1.38652688589425,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0.112131862580613,0,0.202117188958219,0,0.342233301085281,0,0.143444410785353,0.665320713092027,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0 | |phase1_expression=0.363356758541113,2.14100523890983,0.986680828671798,4.00293193412522,0.446961094427288,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,1.73815822752988,0,0.973269740605272,0.189069634328136,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0.612975591598039,0.150238058906597,0,1.07633781413317,1.2813443329114,0.847727604638247,1.20036438433761,0,1.28820270022815,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.644349290496095,0.161646056818812,1.06502877754984,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.337169380156203,0.482022059766964,0.330881918197182,0.435758888184812,0.237270619111097,0.539325232640658,0,0.38474715694639,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0,0.831883446123229,0.535286966391485,0.315404830067869,0.585707074963566,0.300946099727719,0,0,0,0.368738337083406,0,0,0,0,0,0,0.303127571446259,0,0.907170879989041,0.992431231275107,1.53461973288062,2.52594084989766,0.512556597022804,1.02341449813341,1.93024705372329,1.48418066444991,0,0,0,0,0,0.483437798366489,0,0,0.114814448164607,0,0.262248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0,0,0,0.565621727814851,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,35.9327263807493,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.307801034015188,0.227884111694002,0,0,0,0.638002319463839,0.732780747214898,0,0,0.156980256395025,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246346371159628,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0.662091970365432,1.017074150619,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,2.04365596629566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0.438568099157414,0,0,0.337884881306145,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2249819094128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,1.38652688589425,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0.112131862580613,0,0.202117188958219,0,0.342233301085281,0,0.143444410785353,0.665320713092027,0,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0 | ||
|short_description=p10@COL12A1 | |short_description=p10@COL12A1 | ||
}} | }} |
Latest revision as of 19:54, 19 September 2015
Short description: | p10@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_COL12A1_5end |
Coexpression cluster: | C393_amniotic_Placental_Amniotic_clear_Basophils_pharyngeal_tonsil |
Association with transcript: | -93bp_to_ENST00000493109_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 9.36e-18 | 4 |
preadipocyte | 4.76e-16 | 12 |
amnion mesenchymal stem cell | 6.59e-15 | 5 |
preadipocyte of the breast | 1.57e-11 | 3 |
omentum preadipocyte | 3.60e-11 | 3 |
fibroblast | 2.99e-10 | 76 |
perirenal adipocyte cell | 3.05e-09 | 1 |
perirenal preadipocyte | 4.54e-09 | 1 |
multinucleate cell | 4.91e-09 | 1 |
myotube | 4.91e-09 | 1 |
skin fibroblast | 5.18e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 9.36e-18 | 4 |
wall of intestine | 9.36e-18 | 4 |
gastrointestinal system mucosa | 9.36e-18 | 4 |
gastrointestinal system epithelium | 9.36e-18 | 4 |
intestinal epithelium | 9.36e-18 | 4 |
perirenal fat | 1.37e-16 | 2 |
omentum | 2.70e-12 | 6 |
peritoneum | 2.70e-12 | 6 |
abdominal cavity | 2.70e-12 | 6 |
visceral peritoneum | 2.70e-12 | 6 |
amnion | 8.47e-11 | 7 |
somatic layer of lateral plate mesoderm | 1.65e-09 | 8 |
epithelium of mucosa | 3.76e-09 | 8 |
simple columnar epithelium | 3.46e-08 | 9 |
organ component layer | 3.50e-08 | 66 |
breast | 1.07e-07 | 10 |
chest | 4.89e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.37e-14 | 5 |
myotonic disease | 4.37e-14 | 5 |
muscle tissue disease | 4.37e-14 | 5 |
myopathy | 4.37e-14 | 5 |
muscular disease | 4.37e-14 | 5 |
myotonic dystrophy | 4.37e-14 | 5 |